Mercurial > repos > lparsons > cutadapt
comparison cutadapt.xml @ 26:44e2cc14f75b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 7cca91ac13859592f44b2f16d3aa70c28709af8d"
| author | iuc |
|---|---|
| date | Thu, 21 Oct 2021 16:06:55 +0000 |
| parents | 4e5056fefd88 |
| children | de6cebe3c043 |
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| 25:4e5056fefd88 | 26:44e2cc14f75b |
|---|---|
| 1 <tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+@GALAXY_TOOL_VERSION@" profile="20.01"> | 1 <tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> |
| 2 <description>Remove adapter sequences from FASTQ/FASTA</description> | 2 <description>Remove adapter sequences from FASTQ/FASTA</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro='edam_ontology' /> | 6 <expand macro='edam_ontology' /> |
| 173 <option value="paired">Paired-end</option> | 173 <option value="paired">Paired-end</option> |
| 174 <option value="paired_collection">Paired-end Collection</option> | 174 <option value="paired_collection">Paired-end Collection</option> |
| 175 </param> | 175 </param> |
| 176 | 176 |
| 177 <when value="single"> | 177 <when value="single"> |
| 178 <param name="input_1" format="fastq.gz,fastq,fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file" help="Should be of datatype "fastq.gz" or "fasta"" /> | 178 <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file" help="Should be of datatype "fastq.gz" or "fasta"" /> |
| 179 <expand macro="single_end_options" /> | 179 <expand macro="single_end_options" /> |
| 180 </when> | 180 </when> |
| 181 | 181 |
| 182 <when value="paired"> | 182 <when value="paired"> |
| 183 <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #1" help="Should be of datatype "fastq.gz"or "fasta"" /> | 183 <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #1" help="Should be of datatype "fastq.gz"or "fasta"" /> |
| 184 <param name="input_2" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #2" help="Should be of datatype "fastq.gz"or "fasta"" /> | 184 <param name="input_2" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #2" help="Should be of datatype "fastq.gz"or "fasta"" /> |
| 185 <expand macro="paired_end_options" /> | 185 <expand macro="paired_end_options" /> |
| 186 </when> | 186 </when> |
| 187 | 187 |
| 188 <when value="paired_collection"> | 188 <when value="paired_collection"> |
| 189 <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype "fastq.gz" or "fasta"" /> | 189 <param name="input_1" format="@FASTQ_TYPES@" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype "fastq.gz" or "fasta"" /> |
| 190 <expand macro="paired_end_options" /> | 190 <expand macro="paired_end_options" /> |
| 191 </when> | 191 </when> |
| 192 | 192 |
| 193 </conditional> | 193 </conditional> |
| 194 | 194 |