Mercurial > repos > lparsons > cutadapt
changeset 26:44e2cc14f75b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 7cca91ac13859592f44b2f16d3aa70c28709af8d"
| author | iuc |
|---|---|
| date | Thu, 21 Oct 2021 16:06:55 +0000 |
| parents | 4e5056fefd88 |
| children | de6cebe3c043 |
| files | cutadapt.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/cutadapt.xml Fri Jul 02 21:20:57 2021 +0000 +++ b/cutadapt.xml Thu Oct 21 16:06:55 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+@GALAXY_TOOL_VERSION@" profile="20.01"> +<tool id="cutadapt" name="Cutadapt" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> <description>Remove adapter sequences from FASTQ/FASTA</description> <macros> <import>macros.xml</import> @@ -175,18 +175,18 @@ </param> <when value="single"> - <param name="input_1" format="fastq.gz,fastq,fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file" help="Should be of datatype "fastq.gz" or "fasta"" /> + <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file" help="Should be of datatype "fastq.gz" or "fasta"" /> <expand macro="single_end_options" /> </when> <when value="paired"> - <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #1" help="Should be of datatype "fastq.gz"or "fasta"" /> - <param name="input_2" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data" label="FASTQ/A file #2" help="Should be of datatype "fastq.gz"or "fasta"" /> + <param name="input_1" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #1" help="Should be of datatype "fastq.gz"or "fasta"" /> + <param name="input_2" format="@FASTQ_TYPES@" type="data" label="FASTQ/A file #2" help="Should be of datatype "fastq.gz"or "fasta"" /> <expand macro="paired_end_options" /> </when> <when value="paired_collection"> - <param name="input_1" format="fastqsanger,fastqsanger.gz,fastqsanger.bz2,fasta" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype "fastq.gz" or "fasta"" /> + <param name="input_1" format="@FASTQ_TYPES@" type="data_collection" collection_type="paired" label="Paired Collection" help="Should be of datatype "fastq.gz" or "fasta"" /> <expand macro="paired_end_options" /> </when>
--- a/macros.xml Fri Jul 02 21:20:57 2021 +0000 +++ b/macros.xml Thu Oct 21 16:06:55 2021 +0000 @@ -1,6 +1,7 @@ <macros> <token name="@TOOL_VERSION@">3.4</token> - <token name="@GALAXY_TOOL_VERSION@">galaxy1</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@FASTQ_TYPES@">fastq.gz,fastq,fasta</token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0632</edam_topic>