Mercurial > repos > lparsons > cutadapt
changeset 33:135b80fb1ac2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutadapt commit 7143af903be8405ca77d524b343e0973304be693
| author | iuc |
|---|---|
| date | Fri, 14 Oct 2022 12:50:14 +0000 |
| parents | 5915ea1ec9b1 |
| children | 8c0175e03cee |
| files | cutadapt.xml macros.xml |
| diffstat | 2 files changed, 9 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/cutadapt.xml Wed Jun 22 07:11:38 2022 +0000 +++ b/cutadapt.xml Fri Oct 14 12:50:14 2022 +0000 @@ -18,10 +18,16 @@ #set library_type = str($library.type) #if $library_type == 'paired': #set paired = True + #set input_1 = $library.input_1 + #set input_2 = $library.input_2 + ## Avoid the paired read input files sharing the same name, else the program still runs but + ## uses inaccurate results by using only 1 of 2 files. #set read1 = re.sub('[^\w\-\s]', '_', str($library.input_1.element_identifier)) #set read2 = re.sub('[^\w\-\s]', '_', str($library.input_2.element_identifier)) - #set input_1 = $library.input_1 - #set input_2 = $library.input_2 + #if read1 == read2: + #set read1 = read1 + "_1" + #set read2 = read2 + "_2" + #end if #else if $library_type == 'paired_collection' #set paired = True #set input_1 = $library.input_1.forward
--- a/macros.xml Wed Jun 22 07:11:38 2022 +0000 +++ b/macros.xml Fri Oct 14 12:50:14 2022 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">4.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@FASTQ_TYPES@">fastq.gz,fastq,fasta</token> <xml name="edam_ontology"> <edam_topics>