annotate README.txt @ 0:2ac846969812 draft

Uploaded initial version with package dependency
author lparsons
date Fri, 27 Jun 2014 15:39:38 -0400
parents
children 593a729e5706
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
1 == fastq-join Galaxy Wrapper ==
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
2
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
3 This is a Galaxy wrapper for the fastq-join tool from ea-utils suite.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
4
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
5 ** Installation **
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
6
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
7 Installation from a tool shed provides the necessary tool dependencies.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
8
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
9 Otherwise, make sure fastq-join is in the path.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
10 Move the test data files to your galaxy root test-data.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
11 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
12 Restart the Galaxy server.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
13
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
14 ** Attribution **
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
15
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
16 The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
17
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
18 The galaxy wrapper code was written by Lance Parsons (lparsons@princeton.edu), Lewis-Sigler Institute for Integrative Genomics, Princeton University.
2ac846969812 Uploaded initial version with package dependency
lparsons
parents:
diff changeset
19 The code is housed on BitBucket at: https://bitbucket.org/lance_parsons/ea_utils_galaxy_wrapper