Mercurial > repos > lparsons > fastx_barcode_splitter_enhanced
comparison fastx_barcode_splitter.xml @ 3:e7b7cdc1834d draft
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit a3b5b09c69f880529df96bdd5e050d712fa35cf4-dirty
| author | lparsons |
|---|---|
| date | Fri, 11 Mar 2016 17:24:31 -0500 |
| parents | 32304398ef67 |
| children | 0fb7e9130a70 |
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| 2:32304398ef67 | 3:e7b7cdc1834d |
|---|---|
| 58 <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" /> | 58 <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" /> |
| 59 <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" /> | 59 <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" /> |
| 60 <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> | 60 <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> |
| 61 </output> | 61 </output> |
| 62 </test> | 62 </test> |
| 63 <test> | |
| 64 <!-- Split a FASTQ file, using separate index read --> | |
| 65 <param name="BARCODE" value="fastx_barcode_splitter1.txt" /> | |
| 66 <param name="input" value="fastx_barcode_splitter1.fastq" ftype="fastqsolexa" /> | |
| 67 <param name="idxfile" value="fastx_barcode_splitter_index.fastq" ftype="fastqsolexa" /> | |
| 68 <param name="barcodeLocation" value="idxfile" /> | |
| 69 <param name="mismatches" value="2" /> | |
| 70 <param name="partial" value="0" /> | |
| 71 <output name="output" file="fastx_barcode_splitter1.out"> | |
| 72 <discovered_dataset designation="BC1" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC1.out" /> | |
| 73 <discovered_dataset designation="BC2" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC2.out" /> | |
| 74 <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" /> | |
| 75 <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" /> | |
| 76 <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> | |
| 77 </output> | |
| 78 </test> | |
| 63 </tests> | 79 </tests> |
| 64 | 80 |
| 65 <help><![CDATA[ | 81 <help><![CDATA[ |
| 66 **What it does** | 82 **What it does** |
| 67 | 83 |