Mercurial > repos > lparsons > fastx_barcode_splitter_enhanced
diff fastx_barcode_splitter.xml @ 3:e7b7cdc1834d draft
planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/fastx_barcode_splitter_enhanced commit a3b5b09c69f880529df96bdd5e050d712fa35cf4-dirty
| author | lparsons |
|---|---|
| date | Fri, 11 Mar 2016 17:24:31 -0500 |
| parents | 32304398ef67 |
| children | 0fb7e9130a70 |
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--- a/fastx_barcode_splitter.xml Fri Nov 13 12:43:14 2015 -0500 +++ b/fastx_barcode_splitter.xml Fri Mar 11 17:24:31 2016 -0500 @@ -60,6 +60,22 @@ <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> </output> </test> + <test> + <!-- Split a FASTQ file, using separate index read --> + <param name="BARCODE" value="fastx_barcode_splitter1.txt" /> + <param name="input" value="fastx_barcode_splitter1.fastq" ftype="fastqsolexa" /> + <param name="idxfile" value="fastx_barcode_splitter_index.fastq" ftype="fastqsolexa" /> + <param name="barcodeLocation" value="idxfile" /> + <param name="mismatches" value="2" /> + <param name="partial" value="0" /> + <output name="output" file="fastx_barcode_splitter1.out"> + <discovered_dataset designation="BC1" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC1.out" /> + <discovered_dataset designation="BC2" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC2.out" /> + <discovered_dataset designation="BC3" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC3.out" /> + <discovered_dataset designation="BC4" ftype="fastqsolexa" file="fastx_barcode_splitter1_BC4.out" /> + <discovered_dataset designation="unmatched" ftype="fastqsolexa" file="fastx_barcode_splitter1_unmatched.out" /> + </output> + </test> </tests> <help><![CDATA[