Mercurial > repos > lparsons > sam_stats

annotate test-data/testout.txt @ 2:da985dad64c0 draft default tip

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planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
author lparsons
date Thu, 16 Jul 2015 17:35:52 -0400
parents b9e7569a4438
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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1 reads 100
2
da985dad64c0 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
lparsons
parents: 0
diff changeset
2 version 1.38.763
0
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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3 mapped reads 11
2
da985dad64c0 planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/sam_stats commit 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
lparsons
parents: 0
diff changeset
4 pct align 11.000000
0
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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5 mapped bases 377
b9e7569a4438 Uploaded initial version with package dependency.
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6 phred 33
b9e7569a4438 Uploaded initial version with package dependency.
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7 forward 0
b9e7569a4438 Uploaded initial version with package dependency.
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8 reverse 11
b9e7569a4438 Uploaded initial version with package dependency.
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9 len max 48
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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10 len mean 34.2727
b9e7569a4438 Uploaded initial version with package dependency.
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11 len stdev 9.4137
b9e7569a4438 Uploaded initial version with package dependency.
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12 mapq mean 255.0000
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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13 mapq stdev 0.0000
b9e7569a4438 Uploaded initial version with package dependency.
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14 mapq Q1 255.00
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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15 mapq median 255.00
b9e7569a4438 Uploaded initial version with package dependency.
lparsons
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16 mapq Q3 255.00
b9e7569a4438 Uploaded initial version with package dependency.
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17 snp rate 0.000000
b9e7569a4438 Uploaded initial version with package dependency.
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18 pct mismatch 0.0000
b9e7569a4438 Uploaded initial version with package dependency.
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19 base qual mean 31.5650
b9e7569a4438 Uploaded initial version with package dependency.
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20 base qual stdev 3.2627
b9e7569a4438 Uploaded initial version with package dependency.
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21 %A 27.5862
b9e7569a4438 Uploaded initial version with package dependency.
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22 %C 34.4828
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23 %G 16.7109
b9e7569a4438 Uploaded initial version with package dependency.
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24 %T 21.2202
b9e7569a4438 Uploaded initial version with package dependency.
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25 %PCRPRIMER1 8.753316
b9e7569a4438 Uploaded initial version with package dependency.
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26 %PCRPRIMER1+1 45.358090
b9e7569a4438 Uploaded initial version with package dependency.
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27 %PCRPRIMER1+2 9.814324
b9e7569a4438 Uploaded initial version with package dependency.
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28 %PCRPRIMER2+1 36.074271
b9e7569a4438 Uploaded initial version with package dependency.
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29 num ref seqs 4
b9e7569a4438 Uploaded initial version with package dependency.
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30 num ref aligned 4