diff galaxy_stubs/PropertyPlotter.xml @ 2:605370bc1def draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy_stubs/PropertyPlotter.xml	Tue Jul 12 12:33:33 2016 -0400
@@ -0,0 +1,62 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Analysis]-->
+<tool id="PropertyPlotter" name="PropertyPlotter" version="1.1.0">
+  <description>plot molecule properties</description>
+  <macros>
+    <token name="@EXECUTABLE@">PropertyPlotter</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>PropertyPlotter
+
+#if $param_i:
+  -i $param_i
+#end if
+#if $param_p1:
+  -p1     "$param_p1"
+#end if
+#if $param_p2:
+  -p2     "$param_p2"
+#end if
+#if $param_o:
+  -o $param_o
+#end if
+#if $param_quiet:
+  -quiet $param_quiet
+#end if
+</command>
+  <inputs>
+    <param name="param_i" type="data" format="mol2,sdf,drf" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input file" help="(-i) "/>
+    <param name="param_p1" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="name of property 1" help="(-p1) ">
+      <sanitizer>
+        <valid initial="string.printable">
+          <remove value="'"/>
+          <remove value="&quot;"/>
+        </valid>
+      </sanitizer>
+    </param>
+    <param name="param_p2" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="name of property 2" help="(-p2) ">
+      <sanitizer>
+        <valid initial="string.printable">
+          <remove value="'"/>
+          <remove value="&quot;"/>
+        </valid>
+      </sanitizer>
+    </param>
+    <param name="param_quiet" type="integer" min="0" max="1" optional="True" value="0" label="be quiet, i.e. do not print progress information" help="(-quiet) "/>
+  </inputs>
+  <expand macro="advanced_options"/>
+  <outputs>
+    <data name="param_o" format="eps"/>
+  </outputs>
+  <help>PropertyPlotter can be used to generate distribution- or scatter-plots of data contained in molecule property-tags.
+
+In case you want to create a scatter-plot, specify the name of both property-tags to be used with '-p1' and '-p2'. If you want to generate a distribution plot, just specify '-p1'.
+The output graphic will created by use of gnuplot, so make sure to have it installed and in your PATH environment variable.
+
+The output of this tool is a plot in form of an eps or png-file (as chosen).
+
+</help>
+</tool>