view galaxy_stubs/PropertyPlotter.xml @ 2:605370bc1def draft default tip

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<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Analysis]-->
<tool id="PropertyPlotter" name="PropertyPlotter" version="1.1.0">
  <description>plot molecule properties</description>
  <macros>
    <token name="@EXECUTABLE@">PropertyPlotter</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>PropertyPlotter

#if $param_i:
  -i $param_i
#end if
#if $param_p1:
  -p1     "$param_p1"
#end if
#if $param_p2:
  -p2     "$param_p2"
#end if
#if $param_o:
  -o $param_o
#end if
#if $param_quiet:
  -quiet $param_quiet
#end if
</command>
  <inputs>
    <param name="param_i" type="data" format="mol2,sdf,drf" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input file" help="(-i) "/>
    <param name="param_p1" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="name of property 1" help="(-p1) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_p2" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="name of property 2" help="(-p2) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_quiet" type="integer" min="0" max="1" optional="True" value="0" label="be quiet, i.e. do not print progress information" help="(-quiet) "/>
  </inputs>
  <expand macro="advanced_options"/>
  <outputs>
    <data name="param_o" format="eps"/>
  </outputs>
  <help>PropertyPlotter can be used to generate distribution- or scatter-plots of data contained in molecule property-tags.

In case you want to create a scatter-plot, specify the name of both property-tags to be used with '-p1' and '-p2'. If you want to generate a distribution plot, just specify '-p1'.
The output graphic will created by use of gnuplot, so make sure to have it installed and in your PATH environment variable.

The output of this tool is a plot in form of an eps or png-file (as chosen).

</help>
</tool>