Mercurial > repos > lz_hust > gatktools
changeset 0:551fc755f196 draft
Uploaded
| author | lz_hust |
|---|---|
| date | Fri, 31 May 2019 23:07:21 -0400 |
| parents | |
| children | d0a9360bb58e |
| files | fasta-tool |
| diffstat | 1 files changed, 952 insertions(+), 0 deletions(-) [+] |
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13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + +</ul> + +<ul class="d-none js-jump-to-no-results-template-container"> + <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> + <span class="text-gray">No suggested jump to results</span> + </li> +</ul> + +<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> + <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + + +<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option"> + <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href=""> + <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> + <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg> + <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg> + </div> + + <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> + + <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> + </div> + + <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search"> + <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> + In this repository + </span> + <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> + All GitHub + </span> + <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + + <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> + Jump to + <span class="d-inline-block ml-1 v-align-middle">↵</span> + </div> + </a> +</li> + + +</ul> + + </div> + </label> +</form> </div> +</div> + + </div> + + <a class="HeaderMenu-link no-underline mr-3" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="32e9aa59f7df5304d001f6ff3dd9e3719b9626f32cf5f5f31232d3398d780e1a" data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in" href="/login?return_to=%2Fhuster16%2Ffasta-tool"> + Sign in +</a> <a class="HeaderMenu-link d-inline-block no-underline border border-gray-dark rounded-1 px-2 py-1" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="a386f43d169ac14b426ea21a0ccc8db680db747ba7097675164aee8293a25579" data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up" href="/join"> + Sign up +</a> </div> + </div> + </div> +</header> + + </div> + + <div id="start-of-content" class="show-on-focus"></div> + + + <div id="js-flash-container"> + +</div> + + + + <div class="application-main " data-commit-hovercards-enabled> + <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class=""> + <main id="js-repo-pjax-container" data-pjax-container > + + + + + + + + + <div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav "> + <div class="repohead-details-container clearfix container"> + + <ul class="pagehead-actions"> + + + + + <li> + + <a class="tooltipped tooltipped-s btn btn-sm btn-with-count" aria-label="You must be signed in to watch a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="f46b386699cbf31a5ea8cad267ebadc6b98cb77aceb2a4d4c0ea1c2f517d9bbf" href="/login?return_to=%2Fhuster16%2Ffasta-tool"> + <svg class="octicon octicon-eye v-align-text-bottom" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.06 2C3 2 0 8 0 8s3 6 8.06 6C13 14 16 8 16 8s-3-6-7.94-6zM8 12c-2.2 0-4-1.78-4-4 0-2.2 1.8-4 4-4 2.22 0 4 1.8 4 4 0 2.22-1.78 4-4 4zm2-4c0 1.11-.89 2-2 2-1.11 0-2-.89-2-2 0-1.11.89-2 2-2 1.11 0 2 .89 2 2z"/></svg> + Watch +</a> <a class="social-count" href="/huster16/fasta-tool/watchers" + aria-label="0 users are watching this repository"> + 0 + </a> + + </li> + + <li> + <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":189599350,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="f2be63f5c05004155078c5f8afde0222ca218524a38bc09d3b04d9722ceb4829" href="/login?return_to=%2Fhuster16%2Ffasta-tool"> + <svg class="octicon octicon-star v-align-text-bottom" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M14 6l-4.9-.64L7 1 4.9 5.36 0 6l3.6 3.26L2.67 14 7 11.67 11.33 14l-.93-4.74L14 6z"/></svg> + Star +</a> + <a 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1.993 0 0 0-1 3.72V6.5l3 3v1.78A1.993 1.993 0 0 0 5 15a1.993 1.993 0 0 0 1-3.72V9.5l3-3V4.72A1.993 1.993 0 0 0 8 1zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3 10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3-10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"/></svg> + Fork +</a> + <a href="/huster16/fasta-tool/network/members" class="social-count" + aria-label="0 users forked this repository"> + 0 + </a> + </li> +</ul> + + <h1 class="public "> + <svg class="octicon octicon-repo" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg> + <span class="author" itemprop="author"><a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/hovercards?user_id=50308301" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/huster16">huster16</a></span><!-- +--><span class="path-divider">/</span><!-- +--><strong itemprop="name"><a data-pjax="#js-repo-pjax-container" href="/huster16/fasta-tool">fasta-tool</a></strong> + + +</h1> + + </div> + +<nav class="hx_reponav reponav js-repo-nav js-sidenav-container-pjax container" + itemscope + itemtype="http://schema.org/BreadcrumbList" + aria-label="Repository" + data-pjax="#js-repo-pjax-container"> + + <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> + <a class="js-selected-navigation-item selected reponav-item" itemprop="url" data-hotkey="g c" aria-current="page" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches repo_packages /huster16/fasta-tool" href="/huster16/fasta-tool"> + <svg class="octicon octicon-code" viewBox="0 0 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data-hydro-click="{"event_type":"repository.click","payload":{"target":"FIND_FILE_BUTTON","repository_id":189599350,"client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="47b986558deeb969a6ac8b88dbd1e8f287468befc2e4f2bb38b84a372f5bc8be" data-ga-click="Repository, find file, location:repo overview" data-hotkey="t" data-pjax="true" href="/huster16/fasta-tool/find/master">Find File</a> + </div> + + + + + <details class="get-repo-select-menu js-get-repo-select-menu js-anon-get-repo-select-menu position-relative details-overlay details-reset"> + <summary class="btn btn-sm ml-2 btn-primary" data-hydro-click="{"event_type":"repository.click","payload":{"repository_id":189599350,"target":"CLONE_OR_DOWNLOAD_BUTTON","client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="b3005ea4cfe2cdb8f19178a7a48c60ee1f6f245bc6cd2501e3ded1a2e1ba94c8"> + Clone or download + <span class="dropdown-caret"></span> +</summary> <div class="position-relative"> + <div class="get-repo-modal dropdown-menu dropdown-menu-sw pb-0 js-toggler-container js-get-repo-modal"> + + <div class="get-repo-modal-options"> + <div class="clone-options https-clone-options"> + + <h4 class="mb-1"> + Clone with HTTPS + <a class="muted-link" href="https://help.github.com/articles/which-remote-url-should-i-use" target="_blank" title="Which remote URL should I use?"> + <svg class="octicon octicon-question" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M6 10h2v2H6v-2zm4-3.5C10 8.64 8 9 8 9H6c0-.55.45-1 1-1h.5c.28 0 .5-.22.5-.5v-1c0-.28-.22-.5-.5-.5h-1c-.28 0-.5.22-.5.5V7H4c0-1.5 1.5-3 3-3s3 1 3 2.5zM7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7z"/></svg> + </a> + </h4> + <p class="mb-2 get-repo-decription-text"> + Use Git or checkout with SVN using the web URL. + </p> + + <div class="input-group"> + <input type="text" class="form-control input-monospace input-sm" data-autoselect value="https://github.com/huster16/fasta-tool.git" aria-label="Clone this repository at https://github.com/huster16/fasta-tool.git" readonly> + <div class="input-group-button"> + <clipboard-copy value="https://github.com/huster16/fasta-tool.git" aria-label="Copy to clipboard" class="btn btn-sm" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"COPY_URL","git_repository_type":"REPOSITORY","repository_id":189599350,"client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="44e90b8f3dcca3570d21a11ccfd903f3bc05bff51522f876a0d4a45170905d90"><svg class="octicon octicon-clippy" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M2 13h4v1H2v-1zm5-6H2v1h5V7zm2 3V8l-3 3 3 3v-2h5v-2H9zM4.5 9H2v1h2.5V9zM2 12h2.5v-1H2v1zm9 1h1v2c-.02.28-.11.52-.3.7-.19.18-.42.28-.7.3H1c-.55 0-1-.45-1-1V4c0-.55.45-1 1-1h3c0-1.11.89-2 2-2 1.11 0 2 .89 2 2h3c.55 0 1 .45 1 1v5h-1V6H1v9h10v-2zM2 5h8c0-.55-.45-1-1-1H8c-.55 0-1-.45-1-1s-.45-1-1-1-1 .45-1 1-.45 1-1 1H3c-.55 0-1 .45-1 1z"/></svg></clipboard-copy> + </div> +</div> + + </div> + + <div class="mt-2"> + +<a class="btn btn-outline get-repo-btn js-anon-download-zip-link " rel="nofollow" data-hydro-click="{"event_type":"clone_or_download.click","payload":{"feature_clicked":"DOWNLOAD_ZIP","git_repository_type":"REPOSITORY","repository_id":189599350,"client_id":null,"originating_request_id":"8332:1C78:75316C:D08D98:5CF1EBE8","originating_url":"https://github.com/huster16/fasta-tool","referrer":null,"user_id":null}}" data-hydro-click-hmac="4ffb5b79e6affe9f4a70a2880de10614a14dc7e041143e0c48ba16ba29c380c4" data-ga-click="Repository, download zip, location:repo overview" href="/huster16/fasta-tool/archive/master.zip">Download ZIP</a> + + </div> + </div> + + <div class="js-modal-downloading" hidden> + <div class="py-2 px-3"> + <h4 class="lh-condensed mb-3">Downloading<span class="animated-ellipsis-container"><span class="animated-ellipsis">...</span></span></h4> + <p class="text-gray"> + Want to be notified of new releases in + <span class="text-bold">huster16/fasta-tool</span>? + </p> + </div> + <div class="width-full 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