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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <package name="cmake" version="3.1.0">
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5 <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" />
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6 </package>
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7
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8 <package name="samtools" version="0.1.18">
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9 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
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10 </package>
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11
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12 <package name="bamtools" version="2.3.0">
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13 <install version="1.0">
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14 <actions>
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15
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16 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
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17 <action type="shell_command">mkdir build</action>
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1
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18 <action type="shell_command">ls</action>
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19 <action type="shell_command">sleep 10</action>
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0
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20 <action type="shell_command">cd build</action>
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21 <action type="shell_command">cmake ..</action>
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22 <action type="shell_command">make</action>
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23 <action type="shell_command">cd ..</action>
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24
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25 <action type="move_directory_files">
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26 <source_directory>./</source_directory>
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27 <destination_directory>$INSTALL_DIR</destination_directory>
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28 </action>
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29
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30 <action type="set_environment">
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31 <environment_variable action="set_to" name="BAMTOOLS_ROOT">$INSTALL_DIR</environment_variable>
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32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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33 </action>
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34
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35 </actions>
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36 </install>
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37 </package>
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38
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39 </tool_dependency>
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