Mercurial > repos > malbuquerque > package_bamtools_2_3_0

changeset 11:390843b28bdd draft default tip

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Uploaded
author malbuquerque
date Wed, 21 Jan 2015 17:41:20 -0500
parents c0572270b095
children
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jan 21 17:36:15 2015 -0500
+++ b/tool_dependencies.xml	Wed Jan 21 17:41:20 2015 -0500
@@ -12,8 +12,8 @@
 		<package name="bamtools" version="2.3.0">
 			<install version="1.0">
 				<actions>
-		
-					<action type="shell_command">pwd &gt; ~/TEST/whereami0</action>
+					
+					<action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
 		
 					<action type="set_environment_for_install">
 						<repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
@@ -21,27 +21,17 @@
 						</repository>
 					</action>
 
-					<action type="shell_command">pwd &gt; ~/TEST/whereami1</action>
-
 					<action type="set_environment_for_install">
 						<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
 							<package name="samtools" version="0.1.18" />
 						</repository>
-					</action>
-					
-					<action type="shell_command">pwd &gt; ~/TEST/whereami2</action>	
-					<action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami3</action>
+					</action>		
+	
 					<action type="shell_command">mkdir build</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami4</action>
 					<action type="change_directory">build</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami5</action>
 					<action type="shell_command">cmake ..</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami6</action>
 					<action type="shell_command">make</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami7</action>
 					<action type="change_directory">..</action>
-					<action type="shell_command">pwd &gt; ~/TEST/whereami8</action>
 
 					<action type="move_directory_files">
 						<source_directory>./</source_directory>