view workflows/check_alignment_design_file.ga @ 0:e979cb57a5d5 draft default tip

"planemo upload for repository https://github.com/McIntyre-Lab/BayesASE/tree/main/galaxy commit 9b70598ef46a73632d9e0fa0c6ce6776fb5e9d6a"

{
    "a_galaxy_workflow": "true",
    "annotation": "Verifies that the user-supplied Alignment Design file meets BASE requirements and that all FASTQ file names are unique. A TSV file containing unmet requirements, and any duplicate file names is output. **For formatting help, please see the BASE User Guide or the tool help section**\n",
    "format-version": "0.1",
    "name": "Check Alignment Design File ",
    "steps": {
        "0": {
            "annotation": "Input the Design file matching the FASTQ files to their technical replicate and biological replicate numbers. **Must be sorted by biological replicate number**",
            "content_id": null,
            "errors": null,
            "id": 0,
            "input_connections": {},
            "inputs": [
                {
                    "description": "Input the Design file matching the FASTQ files to their technical replicate and biological replicate numbers. **Must be sorted by biological replicate number**",
                    "name": "Input Alignment Design File "
                }
            ],
            "label": "Input Alignment Design File ",
            "name": "Input dataset",
            "outputs": [],
            "position": {
                "left": 174.41668701171875,
                "top": 130.9166717529297
            },
            "tool_id": null,
            "tool_state": "{\"optional\": false}",
            "tool_version": null,
            "type": "data_input",
            "uuid": "26c77524-5651-478b-93a4-36b2bbd34ca7",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "output",
                    "uuid": "e5cd3e56-0c8a-461f-9084-9b22ced9abb9"
                }
            ]
        },
        "1": {
            "annotation": "Ensures that user-supplied alignment design file aligns with BASE requirements and outputs a summary TSV file explaining what is wrong with design file, if needed. ",
            "content_id": "base_check_alignment_design_file",
            "errors": null,
            "id": 1,
            "input_connections": {
                "design": {
                    "id": 0,
                    "output_name": "output"
                }
            },
            "inputs": [],
            "label": "Check Alignment Design File ",
            "name": "Check Alignment Design File",
            "outputs": [
                {
                    "name": "dups",
                    "type": "tabular"
                },
                {
                    "name": "logfile",
                    "type": "tabular"
                }
            ],
            "position": {
                "left": 466.91668701171875,
                "top": 201.91668701171875
            },
            "post_job_actions": {},
            "tool_id": "base_check_alignment_design_file",
            "tool_state": "{\"design\": {\"__class__\": \"ConnectedValue\"}, \"ext\": {\"__class__\": \"ConnectedValue\"}, \"fq\": {\"__class__\": \"ConnectedValue\"}, \"g1\": {\"__class__\": \"ConnectedValue\"}, \"g2\": {\"__class__\": \"ConnectedValue\"}, \"id\": {\"__class__\": \"ConnectedValue\"}, \"readlen\": {\"__class__\": \"ConnectedValue\"}, \"rep\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
            "tool_version": "0.1.0",
            "type": "tool",
            "uuid": "897a9483-2a19-434c-9838-961f9df9b33d",
            "workflow_outputs": [
                {
                    "label": null,
                    "output_name": "dups",
                    "uuid": "963b7645-bb07-4483-bbc7-f6f2a6120a59"
                },
                {
                    "label": null,
                    "output_name": "logfile",
                    "uuid": "481d4d11-03ea-441c-a0e7-78d2e04dc823"
                }
            ]
        }
    },
    "tags": [],
    "uuid": "b295f3bb-d157-40dd-8496-441b95f076a6",
    "version": 5
}