comparison fastq_dump_paired.xml @ 5:86e30bb1e54e draft

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4:6c9eb322892d

    </requirements>
    <command>
## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
## ! We only have a simple single command here.
fastq-dump --log-level fatal --split-3 --accession ${accession_number};
ls -lh | grep ${accession_number};
mv -v ${accession_number}_1.fastq R1.fastq;
mv -v ${accession_number}_2.fastq R2.fastq;
    </command>
    <inputs>

5:86e30bb1e54e

    </requirements>
    <command>
## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
## ! We only have a simple single command here.
fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never;
ls -lh | grep ${accession_number};
mv -v ${accession_number}_1.fastq R1.fastq;
mv -v ${accession_number}_2.fastq R2.fastq;
    </command>
    <inputs>