annotate CADDSuite/galaxyconfigs/tools/InputPartitioner.xml @ 0:bac3c274238f

Migrated tool version 0.93 from old tool shed archive to new tool shed repository
author marcel
date Tue, 07 Jun 2011 16:43:30 -0400
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children b7a89b15646f
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bac3c274238f Migrated tool version 0.93 from old tool shed archive to new tool shed repository
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bac3c274238f Migrated tool version 0.93 from old tool shed archive to new tool shed repository
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2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
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3 <tool id="inputpartitioner" name="InputPartitioner" version="1.1">
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4 <description>split QSAR data set</description>
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5 <command interpreter="bash"><![CDATA[../../InputPartitioner
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6 #if str( $i ) != '' and str( $i ) != 'None' :
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7 -i "$i"
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8 #end if
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9 #if str( $o ) != '' and str( $o ) != 'None' :
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10 -o "$o"
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11 #end if
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12 #if str( $n ) != '' and str( $n ) != 'None' :
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13 -n "$n"
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14 #end if
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15 | tail -n 5
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16 ]]></command>
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17 <inputs>
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18 <param name="i" label="input data-file" optional="false" type="data" format="dat"/>
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19 <param name="n" label="number of partitions" optional="false" type="text" area="true" size="1x5" value=""/>
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20 </inputs>
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21 <outputs>
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22 <data name="o" format="dat"/>
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23 </outputs>
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24 <help>InputPartitioner partitions a given QSAR data set into n partitions with evenly distributed response values.
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25 Thus, this tool can be useful as part of a nested validation pipeline.
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26 Input is a data file as generated by InputReader.
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27 Output will be written to n files postfixed '_TRAIN&lt;i&gt;.dat' and '_TEST&lt;i&gt;.dat', where &lt;i&gt; is the ID of the resp. partition. For each of these partitions, the training set contains only those compounds that were not selected for the resp. test set.</help>
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28 </tool>