annotate CADDSuite/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 4:af446ca2d5c6

Uploaded
author marcel
date Fri, 02 Sep 2011 08:54:17 -0400
parents bb26168c5715
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
bb26168c5715 Uploaded
marcel
parents:
diff changeset
1
bb26168c5715 Uploaded
marcel
parents:
diff changeset
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
4
af446ca2d5c6 Uploaded
marcel
parents: 3
diff changeset
3 <tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="0.9.6">
3
bb26168c5715 Uploaded
marcel
parents:
diff changeset
4 <description>generate galaxy tool-config files</description>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
5 <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator
bb26168c5715 Uploaded
marcel
parents:
diff changeset
6 #if str( $i ) != '' and str( $i ) != 'None' :
bb26168c5715 Uploaded
marcel
parents:
diff changeset
7 -i "$i"
bb26168c5715 Uploaded
marcel
parents:
diff changeset
8 #end if
bb26168c5715 Uploaded
marcel
parents:
diff changeset
9 #if str( $o ) != '' and str( $o ) != 'None' :
bb26168c5715 Uploaded
marcel
parents:
diff changeset
10 -o "$o"
bb26168c5715 Uploaded
marcel
parents:
diff changeset
11 #end if
bb26168c5715 Uploaded
marcel
parents:
diff changeset
12 #if str( $ignore ) != '' and str( $ignore ) != 'None' :
bb26168c5715 Uploaded
marcel
parents:
diff changeset
13 -ignore "$ignore"
bb26168c5715 Uploaded
marcel
parents:
diff changeset
14 #end if
bb26168c5715 Uploaded
marcel
parents:
diff changeset
15 #if str( $s ) != '' and str( $s ) != 'None' :
bb26168c5715 Uploaded
marcel
parents:
diff changeset
16 -s "$s"
bb26168c5715 Uploaded
marcel
parents:
diff changeset
17 #end if
bb26168c5715 Uploaded
marcel
parents:
diff changeset
18 | tail -n 5
bb26168c5715 Uploaded
marcel
parents:
diff changeset
19 ]]></command>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
20 <inputs>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
21 <param name="i" optional="false" label="input par-file" type="data" format="data"/>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
22 <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" size="1x5"/>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
23 </inputs>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
24 <outputs>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
25 <data name="o" format="xml"/>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
26 <data name="s" format="data"/>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
27 </outputs>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
28 <help>This tool can be used to create galaxy tool-configuration files.
bb26168c5715 Uploaded
marcel
parents:
diff changeset
29 As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help>
bb26168c5715 Uploaded
marcel
parents:
diff changeset
30 </tool>