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1 <tool id="concatenator" name="Concatenator" version="1.0.0">
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2 <description>creates a list of accessions and the associated path to their variant calls</description>
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3 <requirements>
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4 <requirement type="package" version="0.0.1">pathogist</requirement>
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5 </requirements>
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6
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7 <command><![CDATA[
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8 $__tool_directory__/concatenator -n #for $path in $paths# ${path.element_identifier} #end for#
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9 -i #for $path in $paths# $path #end for#
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10 ]]></command>
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11
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12 <inputs>
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13 <param name="paths" type="data" label="Collection of calls" help="" optional="False" multiple="True"/>
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14 </inputs>
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15
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16 <outputs>
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17 <data name="output" label="Paths of ${on_string}" format="txt" from_work_dir="paths.txt"/>
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18 </outputs>
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19
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20 <help>
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21
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22 </help>
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23
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24 <citations>
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25
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26 </citations>
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27 </tool>
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