Mercurial > repos > matnguyen > pathogist

view tools/visualization/visualization.xml @ 0:6a73638d707c draft

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author matnguyen
date Fri, 16 Nov 2018 15:28:27 -0500
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<tool id="visualization" name="PathOGiST - Visualization" version="1.0.0">
    <description>: Visualize distance matrix</description>
    <requirements>
        <requirement type="package" version="0.0.1">pathogist</requirement>
    </requirements>

    <command><![CDATA[
        PATHOGIST vis $distance $sample $pdf
    ]]></command>

    <inputs>
        <param name="distance" type="data" format="tabular,txt" label="Distance Matrix"/>
        <param name="sample" type="text" size="30" value="sample" label="Sample Name"/>
        <param name="pdf" type="boolean" checked="false" truevalue="--save_pdf vis.pdf" falsevalue="" label="Save PDF"/>
    </inputs>

    <outputs>
        <data name="diagram" label="Diagram of ${on_string}" format="png" from_work_dir="sample.png"/>
        <data name="pdf_output" label="PDF of ${on_string}" format="pdf" from_work_dir="vis.pdf">
            <filter>pdf == True</filter>
        </data>
    </outputs>

    <help>

    </help>

    <citations>

    </citations>
</tool>