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1 <tool id="visualization" name="PathOGiST - Visualization" version="1.0.0">
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2 <description>: Visualize distance matrix</description>
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3 <requirements>
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4 <requirement type="package" version="0.0.1">pathogist</requirement>
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5 </requirements>
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6
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7 <command><![CDATA[
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8 PATHOGIST vis $distance $sample $pdf
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9 ]]></command>
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10
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11 <inputs>
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12 <param name="distance" type="data" format="tabular,txt" label="Distance Matrix"/>
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13 <param name="sample" type="text" size="30" value="sample" label="Sample Name"/>
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14 <param name="pdf" type="boolean" checked="false" truevalue="--save_pdf vis.pdf" falsevalue="" label="Save PDF"/>
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15 </inputs>
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16
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17 <outputs>
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18 <data name="diagram" label="Diagram of ${on_string}" format="png" from_work_dir="sample.png"/>
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19 <data name="pdf_output" label="PDF of ${on_string}" format="pdf" from_work_dir="vis.pdf">
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20 <filter>pdf == True</filter>
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21 </data>
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22 </outputs>
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23
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24 <help>
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25
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26 </help>
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27
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28 <citations>
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29
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30 </citations>
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31 </tool>
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