Mercurial > repos > matt-shirley > ncbi_sra_toolkit
annotate README.md @ 29:ce2bb7841f17 default tip
Fix for https://github.com/mdshw5/sra-tools-galaxy/issues/1
| author | Matt Shirley <mdshw5@gmail.com> | 
|---|---|
| date | Tue, 07 Apr 2015 09:09:23 -0400 | 
| parents | fdc981664a43 | 
| children | 
| rev | line source | 
|---|---|
| 
28
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
1 [](https://travis-ci.org/mdshw5/sra-tools-galaxy) | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
2 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
3 The Galaxy tool wrappers contained in this tool shed repository rely on software developed by | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
4 the NCBI: http://github.com/ncbi/sra-tools. | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
5 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
6 # INSTALLATION | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
7 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
8 This software release was designed to install using the Galaxy toolshed under Linux and MacOS operating systems on Intel x86-compatible 32/64 bit architectures. | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
9 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
10 *Build Requirements* | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
11 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
12 - bash | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
13 - git | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
14 - make | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
15 - gcc | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
16 - g++ | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
17 - perl | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
18 - libxml2 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
19 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
20 On a Debian OS use: | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
21 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
22 apt-get install build-essential libxml2-dev git | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
23 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
24 On a Mac with [command line tools](https://developer.apple.com/downloads/index.action) installed: | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
25 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
26 brew install git libxml2 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
27 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
28 CONTROLLED-ACCESS DATA | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
29 | 
| 
 
fdc981664a43
Update to most recent GitHub version passing tests.
 
Matt Shirley <mdshw5@gmail.com> 
parents:  
diff
changeset
 | 
30 Encrypted, controlled-access data is not supported. | 
