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1 # pfam_scan.pl, run at Fri Jun 19 13:56:11 2015
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2 #
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3 # Copyright (c) 2009 Genome Research Ltd
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4 # Freely distributed under the GNU
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5 # General Public License
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6 #
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7 # Authors: Jaina Mistry (jaina@ebi.ac.uk),
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8 # Rob Finn (rdf@ebi.ac.uk)
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9 #
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10 # This is free software; you can redistribute it and/or modify it under
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11 # the terms of the GNU General Public License as published by the Free Software
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12 # Foundation; either version 2 of the License, or (at your option) any later version.
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13 # This program is distributed in the hope that it will be useful, but WITHOUT
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14 # ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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15 # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
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16 # details.
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17 #
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18 # You should have received a copy of the GNU General Public License along with
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19 # this program. If not, see <http://www.gnu.org/licenses/>.
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20 # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
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21 # query sequence file: /home/inmare/galaxy/database/files/000/dataset_62.dat
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22 # cpu number specified: 2
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23 # searching against: /home/inmare/galaxy/tools/pfamScan/hmm/Pfam-A.hmm, with cut off --cut_ga
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24 # resolve clan overlaps: on
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25 # predict active sites: off
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26 # = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
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27 #
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28 # <seq id> <alignment start> <alignment end> <envelope start> <envelope end> <hmm acc> <hmm name> <type> <hmm start> <hmm end> <hmm length> <bit score> <E-value> <significance> <clan>
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29
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30 PROKKA_00001 9 46 9 46 PF00376.18 MerR Family 1 38 38 43.1 2.2e-11 1 CL0123
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31 PROKKA_00001 51 113 51 113 PF09278.6 MerR-DNA-bind Domain 1 65 65 67.9 7.2e-19 1 CL0123
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32 PROKKA_00002 1 116 1 116 PF02411.10 MerT Family 1 116 116 214.7 1.7e-64 1 No_clan
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33 PROKKA_00003 25 85 25 86 PF00403.21 HMA Domain 1 61 62 60.3 1.4e-16 1 No_clan
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34 PROKKA_00004 8 121 8 123 PF03203.9 MerC Family 1 114 116 81.1 7.4e-23 1 No_clan
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35 PROKKA_00005 3 62 3 63 PF00403.21 HMA Domain 1 61 62 37.8 1.5e-09 1 No_clan
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36 PROKKA_00005 100 410 99 412 PF07992.9 Pyr_redox_2 Domain 2 199 201 140.8 4.8e-41 1 CL0063
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37 PROKKA_00005 271 345 271 354 PF00070.22 Pyr_redox Domain 1 74 80 51.6 9.3e-14 1 CL0063
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38 PROKKA_00005 440 548 440 549 PF02852.17 Pyr_redox_dim Domain 1 109 110 104.5 2.9e-30 1 No_clan
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39 PROKKA_00006 4 72 4 73 PF13411.1 MerR_1 Family 1 68 69 44.0 1.3e-11 1 CL0123
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40 PROKKA_00007 2 74 1 75 PF05052.7 MerE Family 2 74 75 142.4 3e-42 1 No_clan
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41 PROKKA_00008 13 218 11 219 PF00563.15 EAL Domain 3 209 236 169.6 7.3e-50 1 No_clan
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42 PROKKA_00009 26 78 26 87 PF13518.1 HTH_28 Domain 1 46 52 26.9 3.4e-06 1 CL0123
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43 PROKKA_00009 173 313 172 313 PF00665.21 rve Domain 2 120 120 85.4 2.9e-24 1 CL0219
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44 PROKKA_00010 75 212 73 213 PF13610.1 DDE_Tnp_IS240 Domain 4 139 140 170.7 1.6e-50 1 CL0219
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45 PROKKA_00011 3 40 3 41 PF00126.22 HTH_1 Domain 1 38 60 48.8 4.1e-13 1 CL0123
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46 PROKKA_00013 2 366 1 366 PF03616.9 Glt_symporter Family 2 368 368 544.8 6.1e-164 1 CL0064
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47 PROKKA_00014 1 76 1 77 PF03992.11 ABM Domain 1 77 78 48.0 8.8e-13 1 CL0032
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48 PROKKA_00015 78 98 74 115 PF01842.20 ACT Domain 9 29 66 20.5 0.00024 1 CL0070
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49 PROKKA_00016 5 55 1 55 PF12840.2 HTH_20 Domain 11 61 61 35.6 5.6e-09 1 CL0123
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50 PROKKA_00017 10 55 9 55 PF00440.18 TetR_N Domain 2 47 47 53.5 1.3e-14 1 CL0123
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51 PROKKA_00017 68 201 68 201 PF02909.12 TetR_C Domain 1 139 139 165.1 6.5e-49 1 CL0174
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