diff test-data/test_input.fasta @ 1:1c4b24e9bb16 draft

planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/blob/master/tools/longorf/ commit 5be33ea99532ab3abb000564af4c63c81c4ccd87

--- a/test-data/test_input.fasta	Wed Jun 20 11:02:06 2018 -0400
+++ b/test-data/test_input.fasta	Mon Jul 16 11:01:52 2018 -0400
@@ -1,127 +1,100 @@
->14520830-14521117(-)_1 [2 - 37] 
-KPLENISASREF
->14520830-14521117(-)_2 [3 - 47] 
-SPWRIFQPAENFDLQ
->14520830-14521117(-)_3 [41 - 94] 
-LAVGFGLIFLRSGWMPCL
->14520830-14521117(-)_4 [63 - 152] 
-FSYDLGGCLACDSCSSYSPNEGQCPARKLE
->14520830-14521117(-)_5 [146 - 175] 
-VGMMDLCSET
->14520830-14521117(-)_6 [156 - 200] 
-WTCVQRLNRTNKQNK
->14520830-14521117(-)_7 [1 - 240] 
-KAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSAPHVSWNDGPVFRDLT
-EPTSKTSENRKKEEDTGINS
->14520830-14521117(-)_8 [179 - 325] 
-QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRGTKPLENISASREF
->14520830-14521117(-)_9 [204 - 335] 
-EQEKGRGHWNQFLRVALLGFSSIPSFVGQSPWRIFQPAENFDLQ
->14520830-14521117(-)_10 [329 - 382] 
-LAVGFGLIFLRSGWMPCL
->14520830-14521117(-)_11 [351 - 440] 
-FSYDLGGCLACDSCSSYSPNEGQCPARKLE
->14520830-14521117(-)_12 [434 - 463] 
-VGMMDLCSET
->14520830-14521117(-)_13 [444 - 488] 
-WTCVQRLNRTNKQNK
->14520830-14521117(-)_14 [244 - 528] 
-ELHYLVFLPFQVSWDKAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSA
-PHVSWNDGPVFRDLTEPTSKTSENRKKEEDTGINS
->14520830-14521117(-)_15 [467 - 574] 
-QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRG
->14520830-14521117(-)_16 [492 - 575] 
-EQEKGRGHWNQFLRVALLGFSSIPSFVG
->14520830-14521117(-)_17 [532 - 576] 
-ELHYLVFLPFQVSWD
->14520830-14521117(-)_18 [575 - 543] (REVERSE SENSE) 
-SHETWNGRKTK
->14520830-14521117(-)_19 [574 - 524] (REVERSE SENSE) 
-PTKLGMEEKPSSATLKN
->14520830-14521117(-)_20 [576 - 466] (REVERSE SENSE) 
-VPRNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC
->14520830-14521117(-)_21 [520 - 458] (REVERSE SENSE) 
-FQCPLPFSCSHLFCLLVLLSL
->14520830-14521117(-)_22 [454 - 401] (REVERSE SENSE) 
-TQVHHSNLRAGHCPSFGE
->14520830-14521117(-)_23 [397 - 359] (REVERSE SENSE) 
-ELQLSQARHPPRS
->14520830-14521117(-)_24 [355 - 311] (REVERSE SENSE) 
-ENQTKSYCKSKFSAG
->14520830-14521117(-)_25 [539 - 255] (REVERSE SENSE) 
-CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI
-VGKSNQILLQVKILCWLKYSPGALSHETWNGRKTK
->14520830-14521117(-)_26 [307 - 236] (REVERSE SENSE) 
-NILQGLCPTKLGMEEKPSSATLKN
->14520830-14521117(-)_27 [462 - 178] (REVERSE SENSE) 
-VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGFVP
-RNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC
->14520830-14521117(-)_28 [232 - 170] (REVERSE SENSE) 
-FQCPLPFSCSHLFCLLVLLSL
->14520830-14521117(-)_29 [166 - 113] (REVERSE SENSE) 
-TQVHHSNLRAGHCPSFGE
->14520830-14521117(-)_30 [109 - 71] (REVERSE SENSE) 
-ELQLSQARHPPRS
->14520830-14521117(-)_31 [67 - 23] (REVERSE SENSE) 
-ENQTKSYCKSKFSAG
->14520830-14521117(-)_32 [251 - 3] (REVERSE SENSE) 
-CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI
-VGKSNQILLQVKILCWLKYSPGA
->14520830-14521117(-)_33 [174 - 1] (REVERSE SENSE) 
-VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGF
->103089310-103089560(-)_1 [2 - 37] 
-GTSEKFLKILLS
->103089310-103089560(-)_2 [24 - 92] 
-RFYYHRYLFWFCVSVLSADGPKL
->103089310-103089560(-)_3 [13 - 117] 
-KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK
->103089310-103089560(-)_4 [138 - 167] 
-TACIWLHCGL
->103089310-103089560(-)_5 [180 - 260] 
-NHPYVSVSGYTRKRKESQSGTKSGRYV
->103089310-103089560(-)_6 [41 - 271] 
-ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK
-ERVSEWNKEWEVRLKSF
->103089310-103089560(-)_7 [127 - 288] 
-NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRVGGTSEKFLKILLS
->103089310-103089560(-)_8 [275 - 343] 
-RFYYHRYLFWFCVSVLSADGPKL
->103089310-103089560(-)_9 [264 - 368] 
-KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK
->103089310-103089560(-)_10 [389 - 418] 
-TACIWLHCGL
->103089310-103089560(-)_11 [378 - 500] 
-NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRV
->103089310-103089560(-)_12 [292 - 501] 
-ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK
-ERVSEWNKEW
->103089310-103089560(-)_13 [431 - 502] 
-NHPYVSVSGYTRKRKESQSGTKSG
->103089310-103089560(-)_14 [500 - 447] (REVERSE SENSE) 
-HSLFHSETLSFSSCIQIH
->103089310-103089560(-)_15 [480 - 436] (REVERSE SENSE) 
-DSFLFLVYPDTLTYG
->103089310-103089560(-)_16 [502 - 383] (REVERSE SENSE) 
-PTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
->103089310-103089560(-)_17 [426 - 361] (REVERSE SENSE) 
-KCHKPQWSHIHAVQPDFTLIFF
->103089310-103089560(-)_18 [357 - 289] (REVERSE SENSE) 
-YRLHYNFGPSAESTDTQNQNKYL
->103089310-103089560(-)_19 [379 - 233] (REVERSE SENSE) 
-FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTYLPLFVPL
->103089310-103089560(-)_20 [279 - 196] (REVERSE SENSE) 
-NLQKLFRRTSHSLFHSETLSFSSCIQIH
->103089310-103089560(-)_21 [229 - 185] (REVERSE SENSE) 
-DSFLFLVYPDTLTYG
->103089310-103089560(-)_22 [443 - 132] (REVERSE SENSE) 
-HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
-SDVPPTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA
->103089310-103089560(-)_23 [175 - 110] (REVERSE SENSE) 
-KCHKPQWSHIHAVQPDFTLIFF
->103089310-103089560(-)_24 [106 - 38] (REVERSE SENSE) 
-YRLHYNFGPSAESTDTQNQNKYL
->103089310-103089560(-)_25 [128 - 3] (REVERSE SENSE) 
-FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTY
->103089310-103089560(-)_26 [192 - 1] (REVERSE SENSE) 
-HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF
-SDVP
+>STRG.4.1(-)_1 [3 - 77] 
+PNHCLRGHESPETRQSPLSGKRIPS
+>STRG.4.1(-)_2 [59 - 88] 
+WKEDPLIVCP
+>STRG.4.1(-)_3 [92 - 127] 
+WNRERYFQGFGL
+>STRG.4.1(-)_4 [131 - 268] 
+LPTQKQKDRWGTHTLERFGFTVPTMPAVISLFTETNPSSQITSTQD
+>STRG.4.1(-)_5 [81 - 332] 
+SAPDGIGKDTSRGSDYNCQPRNKRTAGGLTPWRDLGSQCPQCQRLFHYLRRRIPPVRSLQ
+LKTKFWRHPDHLGTHRLLGVPAEN
+>STRG.4.1(-)_6 [272 - 379] 
+VLETPRPSGHAQATWGSCGELSSQMQMESAMMPSTW
+>STRG.4.1(-)_7 [366 - 437] 
+CPLRGRGTGRSHGAAGHAVPPNRH
+>STRG.4.1(-)_8 [465 - 518] 
+KRYGMCCVYLDKFVGGCG
+>STRG.4.1(-)_9 [383 - 565] 
+GHWTKPWSCGACGTTQSTLRPRSSEPIKALRNVLCLPGQICWWLWLSWMGRNKKPWTWFP
+W
+>STRG.4.1(-)_10 [599 - 664] 
+SSEWWSWWTSASSPSTPVGRSS
+>STRG.4.1(-)_11 [522 - 665] 
+AGWVGTRSLGPGSLGDQRGPGGALPDRRSGGRGGHRRHPHQLPWGEAA
+>STRG.4.1(-)_12 [1 - 666] 
+DPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGE
+IWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGER
+HDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQ
+EALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQR
+>STRG.4.1(-)_13 [665 - 594] (REVERSE SENSE) 
+RCFSPRELMGMTPMSTTTTTPTIR
+>STRG.4.1(-)_14 [631 - 491] (REVERSE SENSE) 
+RRCPPRPPLRRSGSAPPGPRWSPREPGPRLLVPTHPAQPQPPTNLSR
+>STRG.4.1(-)_15 [590 - 375] (REVERSE SENSE) 
+CSSRTTLVTKGTRSKASCSDPSSSTTTTNKFVQVNTAHSVTLLWALMTEVSMSIGWYRMP
+RSSMASSSAPTT
+>STRG.4.1(-)_16 [448 - 341] (REVERSE SENSE) 
+PRSQCRLGGTACPAAPWLRPVPLPRRGHHGALHLHL
+>STRG.4.1(-)_17 [371 - 312] (REVERSE SENSE) 
+RASWRSPFASVSSVLRRNPK
+>STRG.4.1(-)_18 [666 - 271] (REVERSE SENSE) 
+ALLLPTGVDGDDADVHHDHHSDDQVVLLQDHVGHQGNQVQGFLFRPIQLNHNHQQICPGK
+HSTFRNAFMGSDDRGLNVDWVVPHAPQLHGFVQCPYHVEGIMALSICICELSSPQEPQVA
+CACPDGLGVSKT
+>STRG.4.1(-)_19 [337 - 260] (REVERSE SENSE) 
+AQFSAGTPSSLCVPRWSGCLQNLVLS
+>STRG.4.1(-)_20 [308 - 255] (REVERSE SENSE) 
+PVRAQMVWVSPKLSLELK
+>STRG.4.1(-)_21 [256 - 224] (REVERSE SENSE) 
+SDLTGGIRLRK
+>STRG.4.1(-)_22 [246 - 169] (REVERSE SENSE) 
+LEGFVSVNSEITAGIVGTVNPNLSKV
+>STRG.4.1(-)_23 [217 - 128] (REVERSE SENSE) 
+NNRWHCGHCEPKSLQGVSPPAVLLFLGWQL
+>STRG.4.1(-)_24 [188 - 78] (REVERSE SENSE) 
+TQISPRCESPSGPFVSGLAIIIRTPGSIFPDSIRGRL
+>STRG.4.1(-)_25 [165 - 58] (REVERSE SENSE) 
+VPQRSFCFWVGNYNPNPWKYLSRFHQGQTMRGSSFH
+>STRG.4.1(-)_26 [74 - 18] (REVERSE SENSE) 
+GDPLSTKRTLSCLRALMST
+>STRG.4.1(-)_27 [124 - 2] (REVERSE SENSE) 
+SEPLEVSFPIPSGADYEGILFPLSGLCRVSGLSCPRRQWLG
+>STRG.4.1(-)_28 [54 - 1] (REVERSE SENSE) 
+ADSVVSQGSHVHVDSGWV
+>STRG.6.1(-)_1 [1 - 63] 
+NWDASWRKDVSRSHQCLLPFH
+>STRG.6.1(-)_2 [24 - 182] 
+RCLTQPPVPSAVPLSCSVNFTPLEKWPSAWTLTVDWDLSSGASAVCILGTSPS
+>STRG.6.1(-)_3 [94 - 195] 
+RSGHLPGPLLWTGICPLVPLQCVFWAPVHPDPAL
+>STRG.6.1(-)_4 [186 - 233] 
+SRPLSWKPTPPCGFLP
+>STRG.6.1(-)_5 [2 - 250] 
+TGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSI
+LIPPSELETNPALWLLAVSQYKV
+>STRG.6.1(-)_6 [199 - 252] 
+AGNQPRLVASCRESVQSP
+>STRG.6.1(-)_7 [237 - 121] (REVERSE SENSE) 
+LTARSHKAGLVSSSEGGIRMDWCPEYTLQRHQRTNPSPQ
+>STRG.6.1(-)_8 [251 - 93] (REVERSE SENSE) 
+GLCTDSRQEATRRGWFPAQRAGSGWTGAQNTHCRGTRGQIPVHSKGPGRWPLL
+>STRG.6.1(-)_9 [117 - 85] (REVERSE SENSE) 
+GSRQMATSLEG
+>STRG.6.1(-)_10 [81 - 34] (REVERSE SENSE) 
+SSHCSLMERQKALVAA
+>STRG.6.1(-)_11 [250 - 14] (REVERSE SENSE) 
+DFVLTHGKKPQGGVGFQLRGRDQDGLVPRIHTAEAPEDKSQSTVRVQADGHFSRGVKFTL
+QLNGTAEGTGGCVRHLYAS
+>STRG.6.1(-)_12 [62 - 3] (REVERSE SENSE) 
+WNGRRHWWLRETSLRQLASQ
+>STRG.6.1(-)_13 [30 - 1] (REVERSE SENSE) 
+DIFTPASIPV
+>STRG.8.1(-)_1 [18 - 56] 
+RTSKKPNGRDPTV
+>STRG.8.1(-)_2 [60 - 95] 
+RLAKAAVVCHRV
+>STRG.8.1(-)_3 [99 - 137] 
+TSLQTAPRLVPTH
+>STRG.8.1(-)_4 [2 - 205] 
+VTPAIKDFQKAQRERSHSLKVGQSCCGLSQSLNISPNRPETGSHTLKMPITTLRILSTRR
\ No newline at end of file