Mercurial > repos > mbernt > longorf
diff test-data/test_input.fasta @ 1:1c4b24e9bb16 draft
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/blob/master/tools/longorf/ commit 5be33ea99532ab3abb000564af4c63c81c4ccd87
author | mbernt |
---|---|
date | Mon, 16 Jul 2018 11:01:52 -0400 |
parents | ec898924d8c7 |
children |
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--- a/test-data/test_input.fasta Wed Jun 20 11:02:06 2018 -0400 +++ b/test-data/test_input.fasta Mon Jul 16 11:01:52 2018 -0400 @@ -1,127 +1,100 @@ ->14520830-14521117(-)_1 [2 - 37] -KPLENISASREF ->14520830-14521117(-)_2 [3 - 47] -SPWRIFQPAENFDLQ ->14520830-14521117(-)_3 [41 - 94] -LAVGFGLIFLRSGWMPCL ->14520830-14521117(-)_4 [63 - 152] -FSYDLGGCLACDSCSSYSPNEGQCPARKLE ->14520830-14521117(-)_5 [146 - 175] -VGMMDLCSET ->14520830-14521117(-)_6 [156 - 200] -WTCVQRLNRTNKQNK ->14520830-14521117(-)_7 [1 - 240] -KAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSAPHVSWNDGPVFRDLT -EPTSKTSENRKKEEDTGINS ->14520830-14521117(-)_8 [179 - 325] -QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRGTKPLENISASREF ->14520830-14521117(-)_9 [204 - 335] -EQEKGRGHWNQFLRVALLGFSSIPSFVGQSPWRIFQPAENFDLQ ->14520830-14521117(-)_10 [329 - 382] -LAVGFGLIFLRSGWMPCL ->14520830-14521117(-)_11 [351 - 440] -FSYDLGGCLACDSCSSYSPNEGQCPARKLE ->14520830-14521117(-)_12 [434 - 463] -VGMMDLCSET ->14520830-14521117(-)_13 [444 - 488] -WTCVQRLNRTNKQNK ->14520830-14521117(-)_14 [244 - 528] -ELHYLVFLPFQVSWDKAPGEYFSQQRILTCSRIWFDFPTIWVDALPVTVAVPIRQMKGSA -PHVSWNDGPVFRDLTEPTSKTSENRKKEEDTGINS ->14520830-14521117(-)_15 [467 - 574] -QNQQAKQVRTGKRKRTLESILESCTTWFFFHSKFRG ->14520830-14521117(-)_16 [492 - 575] -EQEKGRGHWNQFLRVALLGFSSIPSFVG ->14520830-14521117(-)_17 [532 - 576] -ELHYLVFLPFQVSWD ->14520830-14521117(-)_18 [575 - 543] (REVERSE SENSE) -SHETWNGRKTK ->14520830-14521117(-)_19 [574 - 524] (REVERSE SENSE) -PTKLGMEEKPSSATLKN ->14520830-14521117(-)_20 [576 - 466] (REVERSE SENSE) -VPRNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC ->14520830-14521117(-)_21 [520 - 458] (REVERSE SENSE) -FQCPLPFSCSHLFCLLVLLSL ->14520830-14521117(-)_22 [454 - 401] (REVERSE SENSE) -TQVHHSNLRAGHCPSFGE ->14520830-14521117(-)_23 [397 - 359] (REVERSE SENSE) -ELQLSQARHPPRS ->14520830-14521117(-)_24 [355 - 311] (REVERSE SENSE) -ENQTKSYCKSKFSAG ->14520830-14521117(-)_25 [539 - 255] (REVERSE SENSE) -CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI -VGKSNQILLQVKILCWLKYSPGALSHETWNGRKTK ->14520830-14521117(-)_26 [307 - 236] (REVERSE SENSE) -NILQGLCPTKLGMEEKPSSATLKN ->14520830-14521117(-)_27 [462 - 178] (REVERSE SENSE) -VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGFVP -RNLEWKKNQVVQLSRIDSSVLFLFPVLTCFACWFC ->14520830-14521117(-)_28 [232 - 170] (REVERSE SENSE) -FQCPLPFSCSHLFCLLVLLSL ->14520830-14521117(-)_29 [166 - 113] (REVERSE SENSE) -TQVHHSNLRAGHCPSFGE ->14520830-14521117(-)_30 [109 - 71] (REVERSE SENSE) -ELQLSQARHPPRS ->14520830-14521117(-)_31 [67 - 23] (REVERSE SENSE) -ENQTKSYCKSKFSAG ->14520830-14521117(-)_32 [251 - 3] (REVERSE SENSE) -CNSQELIPVSSSFFLFSLVLLVGSVKSLNTGPSFQLTCGALPFIWRIGTATVTGKASTQI -VGKSNQILLQVKILCWLKYSPGA ->14520830-14521117(-)_33 [174 - 1] (REVERSE SENSE) -VSEHRSIIPTYVRGTALHLANRNCNCHRQGIHPDRRKIKPNPTASQNSLLAEIFSRGF ->103089310-103089560(-)_1 [2 - 37] -GTSEKFLKILLS ->103089310-103089560(-)_2 [24 - 92] -RFYYHRYLFWFCVSVLSADGPKL ->103089310-103089560(-)_3 [13 - 117] -KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK ->103089310-103089560(-)_4 [138 - 167] -TACIWLHCGL ->103089310-103089560(-)_5 [180 - 260] -NHPYVSVSGYTRKRKESQSGTKSGRYV ->103089310-103089560(-)_6 [41 - 271] -ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK -ERVSEWNKEWEVRLKSF ->103089310-103089560(-)_7 [127 - 288] -NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRVGGTSEKFLKILLS ->103089310-103089560(-)_8 [275 - 343] -RFYYHRYLFWFCVSVLSADGPKL ->103089310-103089560(-)_9 [264 - 368] -KVSEDFIIIDTCFGFVYLYSLQMVQNCNGVCIRRK ->103089310-103089560(-)_10 [389 - 418] -TACIWLHCGL ->103089310-103089560(-)_11 [378 - 500] -NQAELHVYGSTVACDTFKIIRMSVYLDTRGKGKSLRVEQRV ->103089310-103089560(-)_12 [292 - 501] -ILVLVLCICTLCRWSKIVMESVLEENKGKIRLNCMYMAPLWLVTLLKSSVCQCIWIHEEK -ERVSEWNKEW ->103089310-103089560(-)_13 [431 - 502] -NHPYVSVSGYTRKRKESQSGTKSG ->103089310-103089560(-)_14 [500 - 447] (REVERSE SENSE) -HSLFHSETLSFSSCIQIH ->103089310-103089560(-)_15 [480 - 436] (REVERSE SENSE) -DSFLFLVYPDTLTYG ->103089310-103089560(-)_16 [502 - 383] (REVERSE SENSE) -PTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA ->103089310-103089560(-)_17 [426 - 361] (REVERSE SENSE) -KCHKPQWSHIHAVQPDFTLIFF ->103089310-103089560(-)_18 [357 - 289] (REVERSE SENSE) -YRLHYNFGPSAESTDTQNQNKYL ->103089310-103089560(-)_19 [379 - 233] (REVERSE SENSE) -FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTYLPLFVPL ->103089310-103089560(-)_20 [279 - 196] (REVERSE SENSE) -NLQKLFRRTSHSLFHSETLSFSSCIQIH ->103089310-103089560(-)_21 [229 - 185] (REVERSE SENSE) -DSFLFLVYPDTLTYG ->103089310-103089560(-)_22 [443 - 132] (REVERSE SENSE) -HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF -SDVPPTLCSTLRLFPFPRVSRYTDIRMILKVSQATVEPYTCSSA ->103089310-103089560(-)_23 [175 - 110] (REVERSE SENSE) -KCHKPQWSHIHAVQPDFTLIFF ->103089310-103089560(-)_24 [106 - 38] (REVERSE SENSE) -YRLHYNFGPSAESTDTQNQNKYL ->103089310-103089560(-)_25 [128 - 3] (REVERSE SENSE) -FYPYFLLIQTPLQFWTICREYRYTKPKQVSMIIKSSETFQTY ->103089310-103089560(-)_26 [192 - 1] (REVERSE SENSE) -HTDDFKSVTSHSGAIYMQFSLILPLFSSNTDSITILDHLQRVQIHKTKTSIYDNKIFRNF -SDVP +>STRG.4.1(-)_1 [3 - 77] +PNHCLRGHESPETRQSPLSGKRIPS +>STRG.4.1(-)_2 [59 - 88] +WKEDPLIVCP +>STRG.4.1(-)_3 [92 - 127] +WNRERYFQGFGL +>STRG.4.1(-)_4 [131 - 268] +LPTQKQKDRWGTHTLERFGFTVPTMPAVISLFTETNPSSQITSTQD +>STRG.4.1(-)_5 [81 - 332] +SAPDGIGKDTSRGSDYNCQPRNKRTAGGLTPWRDLGSQCPQCQRLFHYLRRRIPPVRSLQ +LKTKFWRHPDHLGTHRLLGVPAEN +>STRG.4.1(-)_6 [272 - 379] +VLETPRPSGHAQATWGSCGELSSQMQMESAMMPSTW +>STRG.4.1(-)_7 [366 - 437] +CPLRGRGTGRSHGAAGHAVPPNRH +>STRG.4.1(-)_8 [465 - 518] +KRYGMCCVYLDKFVGGCG +>STRG.4.1(-)_9 [383 - 565] +GHWTKPWSCGACGTTQSTLRPRSSEPIKALRNVLCLPGQICWWLWLSWMGRNKKPWTWFP +W +>STRG.4.1(-)_10 [599 - 664] +SSEWWSWWTSASSPSTPVGRSS +>STRG.4.1(-)_11 [522 - 665] +AGWVGTRSLGPGSLGDQRGPGGALPDRRSGGRGGHRRHPHQLPWGEAA +>STRG.4.1(-)_12 [1 - 666] +DPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGE +IWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGER +HDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQ +EALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQR +>STRG.4.1(-)_13 [665 - 594] (REVERSE SENSE) +RCFSPRELMGMTPMSTTTTTPTIR +>STRG.4.1(-)_14 [631 - 491] (REVERSE SENSE) +RRCPPRPPLRRSGSAPPGPRWSPREPGPRLLVPTHPAQPQPPTNLSR +>STRG.4.1(-)_15 [590 - 375] (REVERSE SENSE) +CSSRTTLVTKGTRSKASCSDPSSSTTTTNKFVQVNTAHSVTLLWALMTEVSMSIGWYRMP +RSSMASSSAPTT +>STRG.4.1(-)_16 [448 - 341] (REVERSE SENSE) +PRSQCRLGGTACPAAPWLRPVPLPRRGHHGALHLHL +>STRG.4.1(-)_17 [371 - 312] (REVERSE SENSE) +RASWRSPFASVSSVLRRNPK +>STRG.4.1(-)_18 [666 - 271] (REVERSE SENSE) +ALLLPTGVDGDDADVHHDHHSDDQVVLLQDHVGHQGNQVQGFLFRPIQLNHNHQQICPGK +HSTFRNAFMGSDDRGLNVDWVVPHAPQLHGFVQCPYHVEGIMALSICICELSSPQEPQVA +CACPDGLGVSKT +>STRG.4.1(-)_19 [337 - 260] (REVERSE SENSE) +AQFSAGTPSSLCVPRWSGCLQNLVLS +>STRG.4.1(-)_20 [308 - 255] (REVERSE SENSE) +PVRAQMVWVSPKLSLELK +>STRG.4.1(-)_21 [256 - 224] (REVERSE SENSE) +SDLTGGIRLRK +>STRG.4.1(-)_22 [246 - 169] (REVERSE SENSE) +LEGFVSVNSEITAGIVGTVNPNLSKV +>STRG.4.1(-)_23 [217 - 128] (REVERSE SENSE) +NNRWHCGHCEPKSLQGVSPPAVLLFLGWQL +>STRG.4.1(-)_24 [188 - 78] (REVERSE SENSE) +TQISPRCESPSGPFVSGLAIIIRTPGSIFPDSIRGRL +>STRG.4.1(-)_25 [165 - 58] (REVERSE SENSE) +VPQRSFCFWVGNYNPNPWKYLSRFHQGQTMRGSSFH +>STRG.4.1(-)_26 [74 - 18] (REVERSE SENSE) +GDPLSTKRTLSCLRALMST +>STRG.4.1(-)_27 [124 - 2] (REVERSE SENSE) +SEPLEVSFPIPSGADYEGILFPLSGLCRVSGLSCPRRQWLG +>STRG.4.1(-)_28 [54 - 1] (REVERSE SENSE) +ADSVVSQGSHVHVDSGWV +>STRG.6.1(-)_1 [1 - 63] +NWDASWRKDVSRSHQCLLPFH +>STRG.6.1(-)_2 [24 - 182] +RCLTQPPVPSAVPLSCSVNFTPLEKWPSAWTLTVDWDLSSGASAVCILGTSPS +>STRG.6.1(-)_3 [94 - 195] +RSGHLPGPLLWTGICPLVPLQCVFWAPVHPDPAL +>STRG.6.1(-)_4 [186 - 233] +SRPLSWKPTPPCGFLP +>STRG.6.1(-)_5 [2 - 250] +TGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSI +LIPPSELETNPALWLLAVSQYKV +>STRG.6.1(-)_6 [199 - 252] +AGNQPRLVASCRESVQSP +>STRG.6.1(-)_7 [237 - 121] (REVERSE SENSE) +LTARSHKAGLVSSSEGGIRMDWCPEYTLQRHQRTNPSPQ +>STRG.6.1(-)_8 [251 - 93] (REVERSE SENSE) +GLCTDSRQEATRRGWFPAQRAGSGWTGAQNTHCRGTRGQIPVHSKGPGRWPLL +>STRG.6.1(-)_9 [117 - 85] (REVERSE SENSE) +GSRQMATSLEG +>STRG.6.1(-)_10 [81 - 34] (REVERSE SENSE) +SSHCSLMERQKALVAA +>STRG.6.1(-)_11 [250 - 14] (REVERSE SENSE) +DFVLTHGKKPQGGVGFQLRGRDQDGLVPRIHTAEAPEDKSQSTVRVQADGHFSRGVKFTL +QLNGTAEGTGGCVRHLYAS +>STRG.6.1(-)_12 [62 - 3] (REVERSE SENSE) +WNGRRHWWLRETSLRQLASQ +>STRG.6.1(-)_13 [30 - 1] (REVERSE SENSE) +DIFTPASIPV +>STRG.8.1(-)_1 [18 - 56] +RTSKKPNGRDPTV +>STRG.8.1(-)_2 [60 - 95] +RLAKAAVVCHRV +>STRG.8.1(-)_3 [99 - 137] +TSLQTAPRLVPTH +>STRG.8.1(-)_4 [2 - 205] +VTPAIKDFQKAQRERSHSLKVGQSCCGLSQSLNISPNRPETGSHTLKMPITTLRILSTRR \ No newline at end of file