Mercurial > repos > mbernt > singularity_scriptrunner

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
author ufz
date Fri, 11 Apr 2025 15:20:00 +0000
parents 9512201417a5
children
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9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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1 # <id> <name> <image_name> <interpreter> <container_type> <container_params>
9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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3 # docker://python_3.10
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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4 python_python python (python) /tmp/python_3.10-slim.sif python mkdir -p "$HOME/.local/lib/python3.10/site-packages" && singularity --no-home --cleanenv --home $HOME --env PYTHONUSERBASE="$HOME/.local"
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
diff changeset
6 # docker://python_3.10
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
diff changeset
7 python_python_noinstall python (python no install) /tmp/python_3.10-slim.sif python singularity --no-home --cleanenv
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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10 # docker://rocker/tidyverse
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2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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11 r_rocker_tidyverse R (tidyverse) /tmp/tidyverse_latest.sif Rscript mkdir -p "$HOME/custom_R_library" && singularity --no-home --cleanenv --home $HOME --env R_LIBS_USER="$HOME/custom_R_library"
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
diff changeset
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2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
diff changeset
13 bash_rocker_tidyverse bash (R tidyverse) /tmp/tidyverse_latest.sif bash singularity --no-home --cleanenv --home $HOME
2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
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9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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9512201417a5 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 9e9a0860d255a1fd6c43edd0fde9ea538ee679de
mbernt
parents:
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16 # docker://rocker/tidyverse
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2eb0532a911c planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/scripting/ commit 8c309a4891e29a0fd273f9edc37292e1f3965317
ufz
parents: 0
diff changeset
17 bash_python bash (python) /tmp/python_3.10-slim.sif bash singularity --no-home --cleanenv --home $HOME