Mercurial > repos > md-anderson-bioinformatics > heat_map_creation
changeset 42:2f57ac512f46 draft
Uploaded
| author | insilico-bob |
|---|---|
| date | Mon, 06 Jul 2020 14:23:38 -0400 |
| parents | 8acca16f3921 |
| children | 2aa91f21a24e |
| files | GalaxyMapGen.jar heatmap.sh mda_heatmap_gen.xml mda_heatmap_viz.zip |
| diffstat | 4 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/heatmap.sh Tue Jan 28 15:32:19 2020 -0500 +++ b/heatmap.sh Mon Jul 06 14:23:38 2020 -0400 @@ -132,7 +132,10 @@ classJson=$classJson']' #END: Construct JSON for classification files -parmJson=$parmJson$matrixJson$rowConfigJson$colConfigJson$classJson +#Add build platform JSON for distinction between GenePattern and Galaxy Builders +platformJson='"build_platform": "Galaxy",' + +parmJson=$parmJson$matrixJson$rowConfigJson$colConfigJson$platformJson$classJson parmJson=$parmJson'}' #echo "HEATMAP PARAMETERS JSON: "$parmJson
--- a/mda_heatmap_gen.xml Tue Jan 28 15:32:19 2020 -0500 +++ b/mda_heatmap_gen.xml Mon Jul 06 14:23:38 2020 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8" ?> -<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.3"> +<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.11.4"> <requirements> <requirement type="package" version="3.4.1">r-base</requirement> <requirement type="package" version="8.0.144">openjdk</requirement>