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1 #echo "1: " $1 # tool directory
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2 #echo "2: " $2 # manipulation option
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3 #echo "3: " $3 # input file
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4 #echo "4: " $4 # output file
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5 #echo "5: " $5 # choice
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6 #echo "6: " $6 # thresh
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7 #echo "7: " $7 # axis
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8 #echo "8: " $8 # transpose
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9 #echo "9: " $9 # input2
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10 #echo "10: " ${10} # offsetvalue
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11 #echo "11: " ${11} # scalevalue
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12 #echo "12: " ${12}
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13 #echo "13: " ${13}
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14 #echo "14: " ${14}
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15 #echo "15: " ${15}
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16 #echo "16: " ${16}
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17
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18 #echo "tool directory is: " $1
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19 if [ "$2" = "Matrix_Filters" ]; then
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20 echo "filter chosen"
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21 #python $__tool_directory__/Matrix_Filters.py '$p_input '${manipulation.extra.choice}' '${manipulation.extra.thresh}' '${manipulation.axis}' '$output_file'
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22 python $1/Matrix_Filters.py $3 $5 $6 $7 $4
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23 elif [ "$2" = "Matrix_Multiply" ]; then
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24 echo "multiply chosen"
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25 #python '$__tool_directory__/Matrix_Multiply.py' '$p_input' '${manipulation.extra.transpose}' '${manipulation.extra.input2}' '${manipulation.extra.choice}' '$output_file'
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26 python $1/Matrix_Multiply.py $3 $8 $9 $5 $4
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27 elif [ "$2" = "Matrix_Statistics" ]; then
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28 echo "statistics chosen"
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29 #python '$__tool_directory__/Matrix_Statistics.py' '$p_input' '$choice' '$cutoff' '$axis' '$out_file'
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30 python $1/Matrix_Statistics.py $3 $5 $6 $7 $4
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31 elif [ "$2" = "Matrix_Transformations" ]; then
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32 echo "transform chosen"
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33 #python '$__tool_directory__/Matrix_Transformations.py' '$p_input' '$choice' '$axis' '$scalevalue' '$offsetvalue' '$output_file'
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34 python $1/Matrix_Transformations.py $3 $5 $7 ${11} ${10} $4
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35 elif [ "$2" = "Matrix_Validations" ]; then
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36 echo "validations chosen"
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37 #python '$__tool_directory__/Matrix_Validations.py' '$p_input' '${manipulation.extra.choice}' '${manipulation.extra.axis}' '$output_file'
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38 python $1/Matrix_Validations.py $3 $5 $7 $4
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39 else
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40 echo "no valid choice made"
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41 fi
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42
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