Mercurial > repos > md-anderson-bioinformatics > matrix_manipulation
view Matrix_Manipulation.sh @ 1:f1bcd79cd923 draft default tip
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author | insilico-bob |
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date | Tue, 27 Nov 2018 14:20:40 -0500 |
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#echo "1: " $1 # tool directory #echo "2: " $2 # manipulation option #echo "3: " $3 # input file #echo "4: " $4 # output file #echo "5: " $5 # choice #echo "6: " $6 # thresh #echo "7: " $7 # axis #echo "8: " $8 # transpose #echo "9: " $9 # input2 #echo "10: " ${10} # offsetvalue #echo "11: " ${11} # scalevalue #echo "12: " ${12} #echo "13: " ${13} #echo "14: " ${14} #echo "15: " ${15} #echo "16: " ${16} #echo "tool directory is: " $1 if [ "$2" = "Matrix_Filters" ]; then echo "filter chosen" #python $__tool_directory__/Matrix_Filters.py '$p_input '${manipulation.extra.choice}' '${manipulation.extra.thresh}' '${manipulation.axis}' '$output_file' python $1/Matrix_Filters.py $3 $5 $6 $7 $4 elif [ "$2" = "Matrix_Multiply" ]; then echo "multiply chosen" #python '$__tool_directory__/Matrix_Multiply.py' '$p_input' '${manipulation.extra.transpose}' '${manipulation.extra.input2}' '${manipulation.extra.choice}' '$output_file' python $1/Matrix_Multiply.py $3 $8 $9 $5 $4 elif [ "$2" = "Matrix_Statistics" ]; then echo "statistics chosen" #python '$__tool_directory__/Matrix_Statistics.py' '$p_input' '$choice' '$cutoff' '$axis' '$out_file' python $1/Matrix_Statistics.py $3 $5 $6 $7 $4 elif [ "$2" = "Matrix_Transformations" ]; then echo "transform chosen" #python '$__tool_directory__/Matrix_Transformations.py' '$p_input' '$choice' '$axis' '$scalevalue' '$offsetvalue' '$output_file' python $1/Matrix_Transformations.py $3 $5 $7 ${11} ${10} $4 elif [ "$2" = "Matrix_Validations" ]; then echo "validations chosen" #python '$__tool_directory__/Matrix_Validations.py' '$p_input' '${manipulation.extra.choice}' '${manipulation.extra.axis}' '$output_file' python $1/Matrix_Validations.py $3 $5 $7 $4 else echo "no valid choice made" fi