annotate build/tools/SbmlCheckBalance/SbmlCheckBalance.xml @ 7:1436e9cde9c9 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 1d31a48bf8328b7a3ad9910971d24b9f453459c5

<?xml version="1.0" encoding="UTF-8"?>
<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="1.4.0">
  <description>Check balance of all the reactions in a SBML.</description>
  <xrefs>
    <xref type="bio.tools">met4j</xref>
  </xrefs>
  <requirements>
    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.4.0</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml"
 -out "$out"
]]></command>
  <inputs>
    <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="tsv" name="out"/>
  </outputs>
  <tests/>
  <help><![CDATA[Check balance of all the reactions in a SBML.
A reaction is balanced if all its reactants have a chemical formula with a good syntax and if the quantity of each atom is the same in both sides of the reaction.
For each reaction, indicates if the reaction is balanced, the list of the atoms and the sum of their quantity, and the list of the metabolites that don't have a correct chemical formula.]]></help>
  <citations/>
</tool>