view NotesToFbc.xml @ 3:60bfca3b5185 draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit c3527564d230b36ac1a196606c60c97a5b8ad9cf

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_NotesToFbc" name="NotesToFbc" version="@TOOL_VERSION@">
  <description>Convert sbml html notes to fbc package annotations</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j convert.NotesToFbc -i "$inputPath"
 -o "$outputPath"
]]></command>
  <inputs>
    <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="sbml" name="outputPath"/>
  </outputs>
  <tests/>
  <help><![CDATA[Convert sbml html notes to fbc package annotations
Some old SBML files have notes in the html format. This application will convert them to fbc package annotations.
Be careful, the app reads only html notes, the existing fbc annotations will be overwritten.
@ATTRIBUTION@]]></help>
  <citations>
    <citation type="doi">10.1515/jib-2017-0082</citation>
  </citations>
</tool>