view NotesToFbc.xml @ 1:5bf9a2597f05 draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 71335d4a636672d264cc4f443c07856907571928

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_NotesToFbc" name="NotesToFbc" version="@TOOL_VERSION@">
  <description>Convert sbml html notes to fbc package annotations</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j convert.NotesToFbc -i "$inputPath"
 -o "$outputPath"
]]></command>
  <inputs>
    <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="sbml" name="outputPath"/>
  </outputs>
  <tests/>
  <help><![CDATA[Convert sbml html notes to fbc package annotations
Some old SBML files have notes in the html format. This application will convert them to fbc package annotations.
Be careful, the app reads only html notes, the existing fbc annotations will be overwritten.
@ATTRIBUTION@]]></help>
  <citations>
    <citation type="doi">10.1515/jib-2017-0082</citation>
  </citations>
</tool>