Mercurial > repos > mgarnier > pangenome_cog_analysis
comparison pangenomeCogAnalysis_V1.pl @ 10:ccb38fd085b2 draft
Uploaded
| author | mgarnier |
|---|---|
| date | Mon, 05 Jul 2021 12:52:58 +0000 |
| parents | 9132bdc6ce8b |
| children | b36506d26a43 |
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| 9:ede0f548b6ec | 10:ccb38fd085b2 |
|---|---|
| 494 my $gene_name = $table_gff[8]; | 494 my $gene_name = $table_gff[8]; |
| 495 my $type = $table_gff[2]; | 495 my $type = $table_gff[2]; |
| 496 | 496 |
| 497 | 497 |
| 498 | 498 |
| 499 if ($type && $type eq "mRNA" && $gene_name =~ /ID=([^;]+);/){ | 499 if ($type && ($type eq "mRNA" or $type eq "CDS") && $gene_name =~ /ID=([^;]+);/){ |
| 500 my $gene = $1; | 500 my $gene = $1; |
| 501 # print $gene."\n"; | 501 # print $gene."\n"; |
| 502 # exit; | 502 # exit; |
| 503 $hash_of_genes{$gene}=1; | 503 $hash_of_genes{$gene}=1; |
| 504 | 504 |