view fasta2fastq.xml @ 0:8ab09593f2eb draft default tip

planemo upload commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Wed, 07 Oct 2020 18:48:40 +0000
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<?xml version="1.0" encoding="UTF-8"?>
<tool id="fasta2fastq" name="FASTA-to-FASTQ" version="1.0.0" profile="19.01">
    <description>Convert a FASTA file to a FASTQ file</description>
        python '$__tool_directory__/' 
        -i '$file1'
        -o '$file2'
        -s '$score'
        <param name="file1" type="data" format="fasta" label="FASTA file" optional="false"/>
        <param name="score" type="integer" label="Quality score" value="40" help="Quality score for each base in all reads. Default = 40."/>
        <data name="file2" format="fastq" label="${} on ${on_string}: FASTQ"/>
            <param name="file1" value="Reads_in.fasta"/>
            <output name="file2" file="Reads_out.fastq"/>
            <param name="score" value="40"/>
    <help> <![CDATA[
**What it does**

Takes a FASTA file and converts it to a FASTQ file by adding a static quality score. The default quality score for each base in all reads is 40.

    <expand macro="citation" />