Mercurial > repos > mheinzl > fsd_bvsa
comparison test-data/output_file.tabular @ 8:238a71241876 draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty
| author | mheinzl |
|---|---|
| date | Mon, 08 Oct 2018 05:55:14 -0400 |
| parents | |
| children |
comparison
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| 7:c357ce2783a4 | 8:238a71241876 |
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| 1 Dataset: Test_data.tabular | |
| 2 AB BA | |
| 3 max. family size: 85 332 | |
| 4 absolute frequency: 1 1 | |
| 5 relative frequency: 0.062 0.062 | |
| 6 | |
| 7 | |
| 8 | |
| 9 total nr. of reads 1312 | |
| 10 | |
| 11 | |
| 12 Values from family size distribution | |
| 13 before SSCS building after DCS building after trimming after alignment to reference | |
| 14 FS=1 0 0 0 0 | |
| 15 FS=2 0 0 0 0 | |
| 16 FS=3 1 8 0 1 | |
| 17 FS=4 2 10 6 2 | |
| 18 FS=5 2 5 3 2 | |
| 19 FS=6 1 3 3 1 | |
| 20 FS=7 5 5 3 5 | |
| 21 FS=8 1 2 0 1 | |
| 22 FS=9 3 2 1 3 | |
| 23 FS=10 2 2 3 2 | |
| 24 FS=11 2 1 0 2 | |
| 25 FS=12 0 0 1 0 | |
| 26 FS=13 0 0 4 0 | |
| 27 FS=14 0 0 0 0 | |
| 28 FS=15 1 0 1 1 | |
| 29 FS=16 0 1 3 0 | |
| 30 FS=17 0 0 3 0 | |
| 31 FS=18 0 3 0 0 | |
| 32 FS=19 0 0 0 0 | |
| 33 FS=20 0 0 0 0 | |
| 34 FS>20 12 8 3 12 | |
| 35 sum 32 50 34 32 | |
| 36 | |
| 37 | |
| 38 In the plot, the family sizes of ab and ba strands and of both duplex tags were used. | |
| 39 Whereas the total numbers indicate only the single count of the formed duplex tags. | |
| 40 total nr. of tags (unique, FS>=1) 16 | |
| 41 DCS (before SSCS building, FS>=1) 16 | |
| 42 total nr. of tags (unique, FS>=3) 16 | |
| 43 DCS (before SSCS building, FS>=3) 16 | |
| 44 after DCS building 25 | |
| 45 after trimming 17 | |
| 46 after alignment to reference 16 |