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view test-data/output_file.tabular @ 8:238a71241876 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty
author mheinzl
date Mon, 08 Oct 2018 05:55:14 -0400
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Dataset:	Test_data.tabular
	AB	BA
max. family size:	85	332
absolute frequency:	1	1
relative frequency:	0.062	0.062



total nr. of reads	1312


Values from family size distribution
	before SSCS building	after DCS building	after trimming	after alignment to reference
FS=1	0	0	0	0
FS=2	0	0	0	0
FS=3	1	8	0	1
FS=4	2	10	6	2
FS=5	2	5	3	2
FS=6	1	3	3	1
FS=7	5	5	3	5
FS=8	1	2	0	1
FS=9	3	2	1	3
FS=10	2	2	3	2
FS=11	2	1	0	2
FS=12	0	0	1	0
FS=13	0	0	4	0
FS=14	0	0	0	0
FS=15	1	0	1	1
FS=16	0	1	3	0
FS=17	0	0	3	0
FS=18	0	3	0	0
FS=19	0	0	0	0
FS=20	0	0	0	0
FS>20	12	8	3	12
sum	32	50	34	32


In the plot, the family sizes of ab and ba strands and of both duplex tags were used.
Whereas the total numbers indicate only the single count of the formed duplex tags.
total nr. of tags (unique, FS>=1)	16
DCS (before SSCS building, FS>=1)	16
total nr. of tags (unique, FS>=3)	16
DCS (before SSCS building, FS>=3)	16
after DCS building	25
after trimming	17
after alignment to reference	16