Mercurial > repos > mheinzl > fsd_bvsa
diff fsd_beforevsafter.xml @ 2:e8115b71edbd draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_beforevsafter commit b9403b3ce2b7a41fa8ee1aa47909152de78cf641
author | mheinzl |
---|---|
date | Tue, 15 May 2018 13:50:02 -0400 |
parents | 6ed6dca9488f |
children | 327c40a821ed |
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--- a/fsd_beforevsafter.xml Sat May 12 04:51:34 2018 -0400 +++ b/fsd_beforevsafter.xml Tue May 15 13:50:02 2018 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="fsd_beforevsafter" name="Duplex Sequencing Analysis:" version="0.0.2"> +<tool id="fsd_beforevsafter" name="Duplex Sequencing Analysis:" version="0.0.3"> <requirements> <!-- galaxy version 16.04 --> <requirement type="package" version="2.7">python</requirement> @@ -9,7 +9,7 @@ </requirements> <description>Family size distribution (FSD) of tags from various steps of the Du Novo pipeline</description> <command> - python2 $__tool_directory__/fsd_beforevsafter.py --inputFile_SSCS "$file1" --makeDCS "$makeDCS" --afterTrimming "$afterTrimming" --alignedTags "$alignedTags" --sep $separator --output_csv $output_csv --output_pdf $output_pdf + python2 $__tool_directory__/fsd_beforevsafter.py --inputFile_SSCS "$file1" --inputName1 "$file1.name" --makeDCS "$makeDCS" --afterTrimming "$afterTrimming" --alignedTags "$alignedTags" --sep $separator --output_pdf $output_pdf --output_csv $output_csv </command> <inputs> <param name="file1" type="data" format="tabular" label="Dataset 1: input tags of whole dataset" optional="false" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family."/> @@ -58,6 +58,7 @@ + **Dataset 4 (optional):** Finally, a TXT file with the regions and all tags that were aligned to the reference genome can be given as input. This file can obtained from a different tool. +-----------+------------------------------+