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comparison test-data/hd_chimeras_output.tab @ 29:6b15b3b6405c draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
author mheinzl
date Wed, 24 Jul 2019 05:58:15 -0400
parents 9e384b0741f1
children
comparison
equal deleted inserted replaced
28:1fa7342a140d 29:6b15b3b6405c
1 chimera tag similar tag with HD=0 1 chimera tag family size, read direction similar tag with HD=0
2 AAAAAAAAAAAA AACCAAAACTTC *AAAAAAAAAAAA* TCTTTCTTTGAG 2 AAAAAAAAAAAA AACCAAAACTTC 1 ba *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
3 AAAAAAAAAAAA ACCAGGCGTCGA *AAAAAAAAAAAA* AACCAAAACTTC, *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* TCTTTCTTTGAG, *AAAAAAAAAAAA* TTGGGTTCCTTA 3 AAAAAAAAAAAA ACCAGGCGTCGA 1 ba *AAAAAAAAAAAA* AACCAAAACTTC 1 ba, *AAAAAAAAAAAA* AGCTCCACGTTG 1 ba, *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab, *AAAAAAAAAAAA* TTGGGTTCCTTA 1 ab
4 AAAAAAAAAAAA AGCTCCACGTTG *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* CCGCTCCTCACA 4 AAAAAAAAAAAA ATCGTGGTTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAG *ATCGTGGTTTGT* 4 ba
5 AAAAAAAAAAAA ATCGTGGTTTGT *AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAG *ATCGTGGTTTGT* 5 AAAAAAAAAAAA ATTCACCCTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAT *ATTCACCCTTGT* 6 ba
6 AAAAAAAAAAAA ATTCACCCTTGT *AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAT *ATTCACCCTTGT* 6 AAAAAAAAAAAA CACACTTAACTT 7 ba *AAAAAAAAAAAA* ATTCACCCTTGT 1 ba, *AAAAAAAAAAAA* CCGCTCCTCACA 4 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
7 AAAAAAAAAAAA CACACTTAACTT *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CCGCTCCTCACA, *AAAAAAAAAAAA* TCTTTCTTTGAG 7 AAAAAAAAAAAA GGCAACACAGAA 1 ab *AAAAAAAAAAAA* ATCGTGGTTTGT 1 ba, AAAAAAAAAAAG *GGCAACACAGAA* 3 ab
8 AAAAAAAAAAAA CAGTGTTGAGAC *AAAAAAAAAAAA* ATCGTGGTTTGT, *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CACACTTAACTT 8 AAAAAAAAAAAG AGTCGCACCCAG 1 ba *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
9 AAAAAAAAAAAA CCGCTCCTCACA *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CACACTTAACTT 9 AAAAAAAAAAAG CGCAACACAGAA 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
10 AAAAAAAAAAAA GGCAACACAGAA *AAAAAAAAAAAA* ATCGTGGTTTGT, AAAAAAAAAAAG *GGCAACACAGAA* 10 AAAAAAAAAAAG TAGCCCTAAACG 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
11 AAAAAAAAAAAA TCTTTCTTTGAG *AAAAAAAAAAAA* AACCAAAACTTC, AAAAAAAAAAAG *TCTTTCTTTGAG* 11 AAAAAAAAAAAG TCTTTCTTTGAG 1 ab AAAAAAAAAAAA *TCTTTCTTTGAG* 2 ab, *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba, *AAAAAAAAAAAG* CGCAACACAGAA 1 ab, *AAAAAAAAAAAG* GGCAACACAGAA 3 ab
12 AAAAAAAAAAAA TTGGGTTCCTTA *AAAAAAAAAAAA* ACCAGGCGTCGA, *AAAAAAAAAAAA* GGCAACACAGAA, *AAAAAAAAAAAA* TCTTTCTTTGAG 12 AAAAAAAAAAAT ATCATAGACTCT 1 ab *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
13 AAAAAAAAAAAG AGTCGCACCCAG *AAAAAAAAAAAG* ATCGTGGTTTGT 13 AAAAAAAAAAAT ATTCGAAAGTTA 1 ba *AAAAAAAAAAAT* ATCATAGACTCT 1 ab, *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
14 AAAAAAAAAAAG ATCGTGGTTTGT AAAAAAAAAAAA *ATCGTGGTTTGT*, *AAAAAAAAAAAG* TAGCCCTAAACG
15 AAAAAAAAAAAG CGCAACACAGAA *AAAAAAAAAAAG* ATCGTGGTTTGT
16 AAAAAAAAAAAG GGCAACACAGAA AAAAAAAAAAAA *GGCAACACAGAA*, *AAAAAAAAAAAG* ATCGTGGTTTGT
17 AAAAAAAAAAAG TAGCCCTAAACG *AAAAAAAAAAAG* ATCGTGGTTTGT
18 AAAAAAAAAAAG TCTTTCTTTGAG AAAAAAAAAAAA *TCTTTCTTTGAG*, *AAAAAAAAAAAG* ATCGTGGTTTGT, *AAAAAAAAAAAG* CGCAACACAGAA, *AAAAAAAAAAAG* GGCAACACAGAA
19 AAAAAAAAAAAT ATCATAGACTCT *AAAAAAAAAAAT* ATTCACCCTTGT
20 AAAAAAAAAAAT ATTCACCCTTGT AAAAAAAAAAAA *ATTCACCCTTGT*, *AAAAAAAAAAAT* ATCATAGACTCT
21 AAAAAAAAAAAT ATTCGAAAGTTA *AAAAAAAAAAAT* ATCATAGACTCT, *AAAAAAAAAAAT* ATTCACCCTTGT
22 This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column. 14 This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column.
23 The tags were separated by an empty space into their halves and the * marks the identical half. 15 The tags were separated by an empty space into their halves and the * marks the identical half.
16
17 Statistics of nr. of tags that returned max. HD (2nd column)
18 minimum 1 tag(s)
19 mean 2.08333333333 tag(s)
20 median 2.0 tag(s)
21 maximum 5 tag(s)
22 sum 25 tag(s)