Mercurial > repos > mheinzl > hd
diff test-data/hd_chimeras_output.tab @ 29:6b15b3b6405c draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
author | mheinzl |
---|---|
date | Wed, 24 Jul 2019 05:58:15 -0400 |
parents | 9e384b0741f1 |
children |
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--- a/test-data/hd_chimeras_output.tab Mon Jun 03 05:37:01 2019 -0400 +++ b/test-data/hd_chimeras_output.tab Wed Jul 24 05:58:15 2019 -0400 @@ -1,23 +1,22 @@ -chimera tag similar tag with HD=0 -AAAAAAAAAAAA AACCAAAACTTC *AAAAAAAAAAAA* TCTTTCTTTGAG -AAAAAAAAAAAA ACCAGGCGTCGA *AAAAAAAAAAAA* AACCAAAACTTC, *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* TCTTTCTTTGAG, *AAAAAAAAAAAA* TTGGGTTCCTTA -AAAAAAAAAAAA AGCTCCACGTTG *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* CCGCTCCTCACA -AAAAAAAAAAAA ATCGTGGTTTGT *AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAG *ATCGTGGTTTGT* -AAAAAAAAAAAA ATTCACCCTTGT *AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAT *ATTCACCCTTGT* -AAAAAAAAAAAA CACACTTAACTT *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CCGCTCCTCACA, *AAAAAAAAAAAA* TCTTTCTTTGAG -AAAAAAAAAAAA CAGTGTTGAGAC *AAAAAAAAAAAA* ATCGTGGTTTGT, *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CACACTTAACTT -AAAAAAAAAAAA CCGCTCCTCACA *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CACACTTAACTT -AAAAAAAAAAAA GGCAACACAGAA *AAAAAAAAAAAA* ATCGTGGTTTGT, AAAAAAAAAAAG *GGCAACACAGAA* -AAAAAAAAAAAA TCTTTCTTTGAG *AAAAAAAAAAAA* AACCAAAACTTC, AAAAAAAAAAAG *TCTTTCTTTGAG* -AAAAAAAAAAAA TTGGGTTCCTTA *AAAAAAAAAAAA* ACCAGGCGTCGA, *AAAAAAAAAAAA* GGCAACACAGAA, *AAAAAAAAAAAA* TCTTTCTTTGAG -AAAAAAAAAAAG AGTCGCACCCAG *AAAAAAAAAAAG* ATCGTGGTTTGT -AAAAAAAAAAAG ATCGTGGTTTGT AAAAAAAAAAAA *ATCGTGGTTTGT*, *AAAAAAAAAAAG* TAGCCCTAAACG -AAAAAAAAAAAG CGCAACACAGAA *AAAAAAAAAAAG* ATCGTGGTTTGT -AAAAAAAAAAAG GGCAACACAGAA AAAAAAAAAAAA *GGCAACACAGAA*, *AAAAAAAAAAAG* ATCGTGGTTTGT -AAAAAAAAAAAG TAGCCCTAAACG *AAAAAAAAAAAG* ATCGTGGTTTGT -AAAAAAAAAAAG TCTTTCTTTGAG AAAAAAAAAAAA *TCTTTCTTTGAG*, *AAAAAAAAAAAG* ATCGTGGTTTGT, *AAAAAAAAAAAG* CGCAACACAGAA, *AAAAAAAAAAAG* GGCAACACAGAA -AAAAAAAAAAAT ATCATAGACTCT *AAAAAAAAAAAT* ATTCACCCTTGT -AAAAAAAAAAAT ATTCACCCTTGT AAAAAAAAAAAA *ATTCACCCTTGT*, *AAAAAAAAAAAT* ATCATAGACTCT -AAAAAAAAAAAT ATTCGAAAGTTA *AAAAAAAAAAAT* ATCATAGACTCT, *AAAAAAAAAAAT* ATTCACCCTTGT +chimera tag family size, read direction similar tag with HD=0 +AAAAAAAAAAAA AACCAAAACTTC 1 ba *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab +AAAAAAAAAAAA ACCAGGCGTCGA 1 ba *AAAAAAAAAAAA* AACCAAAACTTC 1 ba, *AAAAAAAAAAAA* AGCTCCACGTTG 1 ba, *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab, *AAAAAAAAAAAA* TTGGGTTCCTTA 1 ab +AAAAAAAAAAAA ATCGTGGTTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAG *ATCGTGGTTTGT* 4 ba +AAAAAAAAAAAA ATTCACCCTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAT *ATTCACCCTTGT* 6 ba +AAAAAAAAAAAA CACACTTAACTT 7 ba *AAAAAAAAAAAA* ATTCACCCTTGT 1 ba, *AAAAAAAAAAAA* CCGCTCCTCACA 4 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab +AAAAAAAAAAAA GGCAACACAGAA 1 ab *AAAAAAAAAAAA* ATCGTGGTTTGT 1 ba, AAAAAAAAAAAG *GGCAACACAGAA* 3 ab +AAAAAAAAAAAG AGTCGCACCCAG 1 ba *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba +AAAAAAAAAAAG CGCAACACAGAA 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba +AAAAAAAAAAAG TAGCCCTAAACG 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba +AAAAAAAAAAAG TCTTTCTTTGAG 1 ab AAAAAAAAAAAA *TCTTTCTTTGAG* 2 ab, *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba, *AAAAAAAAAAAG* CGCAACACAGAA 1 ab, *AAAAAAAAAAAG* GGCAACACAGAA 3 ab +AAAAAAAAAAAT ATCATAGACTCT 1 ab *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba +AAAAAAAAAAAT ATTCGAAAGTTA 1 ba *AAAAAAAAAAAT* ATCATAGACTCT 1 ab, *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column. - The tags were separated by an empty space into their halves and the * marks the identical half. \ No newline at end of file +The tags were separated by an empty space into their halves and the * marks the identical half. + +Statistics of nr. of tags that returned max. HD (2nd column) +minimum 1 tag(s) +mean 2.08333333333 tag(s) +median 2.0 tag(s) +maximum 5 tag(s) +sum 25 tag(s)