diff test-data/hd_chimeras_output.tab @ 29:6b15b3b6405c draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty

--- a/test-data/hd_chimeras_output.tab	Mon Jun 03 05:37:01 2019 -0400
+++ b/test-data/hd_chimeras_output.tab	Wed Jul 24 05:58:15 2019 -0400
@@ -1,23 +1,22 @@
-chimera tag	similar tag with HD=0
-AAAAAAAAAAAA AACCAAAACTTC	*AAAAAAAAAAAA* TCTTTCTTTGAG
-AAAAAAAAAAAA ACCAGGCGTCGA	*AAAAAAAAAAAA* AACCAAAACTTC, *AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* TCTTTCTTTGAG, *AAAAAAAAAAAA* TTGGGTTCCTTA
-AAAAAAAAAAAA AGCTCCACGTTG	*AAAAAAAAAAAA* CAGTGTTGAGAC, *AAAAAAAAAAAA* CCGCTCCTCACA
-AAAAAAAAAAAA ATCGTGGTTTGT	*AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAG *ATCGTGGTTTGT*
-AAAAAAAAAAAA ATTCACCCTTGT	*AAAAAAAAAAAA* CAGTGTTGAGAC, AAAAAAAAAAAT *ATTCACCCTTGT*
-AAAAAAAAAAAA CACACTTAACTT	*AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CCGCTCCTCACA, *AAAAAAAAAAAA* TCTTTCTTTGAG
-AAAAAAAAAAAA CAGTGTTGAGAC	*AAAAAAAAAAAA* ATCGTGGTTTGT, *AAAAAAAAAAAA* ATTCACCCTTGT, *AAAAAAAAAAAA* CACACTTAACTT
-AAAAAAAAAAAA CCGCTCCTCACA	*AAAAAAAAAAAA* AGCTCCACGTTG, *AAAAAAAAAAAA* CACACTTAACTT
-AAAAAAAAAAAA GGCAACACAGAA	*AAAAAAAAAAAA* ATCGTGGTTTGT, AAAAAAAAAAAG *GGCAACACAGAA*
-AAAAAAAAAAAA TCTTTCTTTGAG	*AAAAAAAAAAAA* AACCAAAACTTC, AAAAAAAAAAAG *TCTTTCTTTGAG*
-AAAAAAAAAAAA TTGGGTTCCTTA	*AAAAAAAAAAAA* ACCAGGCGTCGA, *AAAAAAAAAAAA* GGCAACACAGAA, *AAAAAAAAAAAA* TCTTTCTTTGAG
-AAAAAAAAAAAG AGTCGCACCCAG	*AAAAAAAAAAAG* ATCGTGGTTTGT
-AAAAAAAAAAAG ATCGTGGTTTGT	AAAAAAAAAAAA *ATCGTGGTTTGT*, *AAAAAAAAAAAG* TAGCCCTAAACG
-AAAAAAAAAAAG CGCAACACAGAA	*AAAAAAAAAAAG* ATCGTGGTTTGT
-AAAAAAAAAAAG GGCAACACAGAA	AAAAAAAAAAAA *GGCAACACAGAA*, *AAAAAAAAAAAG* ATCGTGGTTTGT
-AAAAAAAAAAAG TAGCCCTAAACG	*AAAAAAAAAAAG* ATCGTGGTTTGT
-AAAAAAAAAAAG TCTTTCTTTGAG	AAAAAAAAAAAA *TCTTTCTTTGAG*, *AAAAAAAAAAAG* ATCGTGGTTTGT, *AAAAAAAAAAAG* CGCAACACAGAA, *AAAAAAAAAAAG* GGCAACACAGAA
-AAAAAAAAAAAT ATCATAGACTCT	*AAAAAAAAAAAT* ATTCACCCTTGT
-AAAAAAAAAAAT ATTCACCCTTGT	AAAAAAAAAAAA *ATTCACCCTTGT*, *AAAAAAAAAAAT* ATCATAGACTCT
-AAAAAAAAAAAT ATTCGAAAGTTA	*AAAAAAAAAAAT* ATCATAGACTCT, *AAAAAAAAAAAT* ATTCACCCTTGT
+chimera tag	family size, read direction	similar tag with HD=0
+AAAAAAAAAAAA AACCAAAACTTC	1 ba	*AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
+AAAAAAAAAAAA ACCAGGCGTCGA	1 ba	*AAAAAAAAAAAA* AACCAAAACTTC 1 ba, *AAAAAAAAAAAA* AGCTCCACGTTG 1 ba, *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab, *AAAAAAAAAAAA* TTGGGTTCCTTA 1 ab
+AAAAAAAAAAAA ATCGTGGTTTGT	1 ba	*AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAG *ATCGTGGTTTGT* 4 ba
+AAAAAAAAAAAA ATTCACCCTTGT	1 ba	*AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAT *ATTCACCCTTGT* 6 ba
+AAAAAAAAAAAA CACACTTAACTT	7 ba	*AAAAAAAAAAAA* ATTCACCCTTGT 1 ba, *AAAAAAAAAAAA* CCGCTCCTCACA 4 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
+AAAAAAAAAAAA GGCAACACAGAA	1 ab	*AAAAAAAAAAAA* ATCGTGGTTTGT 1 ba, AAAAAAAAAAAG *GGCAACACAGAA* 3 ab
+AAAAAAAAAAAG AGTCGCACCCAG	1 ba	*AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
+AAAAAAAAAAAG CGCAACACAGAA	1 ab	*AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
+AAAAAAAAAAAG TAGCCCTAAACG	1 ab	*AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
+AAAAAAAAAAAG TCTTTCTTTGAG	1 ab	AAAAAAAAAAAA *TCTTTCTTTGAG* 2 ab, *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba, *AAAAAAAAAAAG* CGCAACACAGAA 1 ab, *AAAAAAAAAAAG* GGCAACACAGAA 3 ab
+AAAAAAAAAAAT ATCATAGACTCT	1 ab	*AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
+AAAAAAAAAAAT ATTCGAAAGTTA	1 ba	*AAAAAAAAAAAT* ATCATAGACTCT 1 ab, *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
 This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column.
- The tags were separated by an empty space into their halves and the * marks the identical half.
\ No newline at end of file
+The tags were separated by an empty space into their halves and the * marks the identical half.
+
+Statistics of nr. of tags that returned max. HD (2nd column)
+minimum	1	tag(s)
+mean	2.08333333333	tag(s)
+median	2.0	tag(s)
+maximum	5	tag(s)
+sum	25	tag(s)