diff test-data/output_file.tabular @ 19:2e9f7ea7ae93 draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_file.tabular	Mon Oct 08 05:56:04 2018 -0400
@@ -0,0 +1,85 @@
+Test_data
+number of tags per file	20 (from 20) against 20
+
+Hamming distance separated by family size
+	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
+HD=1	5	1	1	1	1	0	9	
+HD=6	3	0	0	0	0	0	3	
+HD=7	4	0	0	0	1	0	5	
+HD=8	2	0	0	1	0	0	3	
+sum	14	1	1	2	2	0	20	
+
+Family size distribution separated by Hamming distance
+	HD=1	HD=2	HD=3	HD=4	HD=5-8	HD>8	sum	
+FS=1	5	0	0	0	9	0	14	
+FS=2	1	0	0	0	0	0	1	
+FS=3	1	0	0	0	0	0	1	
+FS=4	1	0	0	0	1	0	2	
+FS=6	1	0	0	0	0	0	1	
+FS=7	0	0	0	0	1	0	1	
+sum	9	0	0	0	11	0	20	
+
+
+max. family size:	7
+absolute frequency:	1
+relative frequency:	0.05
+
+The hamming distances were calculated by comparing each half of all tags against the tag(s) with the minimum Hamming distance per half.
+It is possible that one tag can have the minimum HD from multiple tags, so the sample size in this calculation differs from the sample size entered by the user.
+actual number of tags with min HD = 171 (sample size by user = 20)
+length of one part of the tag = 12
+
+Hamming distance of each half in the tag
+	HD a	HD b'	HD b	HD a'	HD a+b	sum	
+HD=0	146	0	8	4	0	158	
+HD=1	0	2	2	21	11	36	
+HD=2	0	0	0	0	1	1	
+HD=5	0	0	4	0	0	4	
+HD=6	0	2	2	0	6	10	
+HD=7	0	16	9	0	21	46	
+HD=8	0	20	0	0	26	46	
+HD=9	0	50	0	0	50	100	
+HD=10	0	30	0	0	30	60	
+HD=11	0	18	0	0	18	36	
+HD=12	0	8	0	0	8	16	
+sum	146	146	25	25	171	513	
+
+Absolute delta Hamming distances within the tag
+	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
+diff=0	1	0	0	0	0	0	1	
+diff=1	6	1	2	1	1	0	11	
+diff=4	4	0	0	0	0	0	4	
+diff=5	2	0	0	0	0	0	2	
+diff=6	6	0	0	1	1	0	8	
+diff=7	15	0	1	0	3	0	19	
+diff=8	15	2	0	1	2	0	20	
+diff=9	37	4	1	4	4	0	50	
+diff=10	22	2	1	4	1	0	30	
+diff=11	8	1	1	5	3	0	18	
+diff=12	6	1	0	1	0	0	8	
+sum	122	11	6	17	15	0	171	
+
+Chimera analysis: relative delta Hamming distances
+	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
+diff=0.0	1	0	0	0	0	0	1	
+diff=0.7	6	0	0	0	0	0	6	
+diff=0.8	4	0	0	1	1	0	6	
+diff=1.0	111	11	6	16	14	0	158	
+sum	122	11	6	17	15	0	171	
+
+Chimeras:
+All tags were filtered: only those tags where at least one half is identical with the half of the min. tag are kept.
+So the hamming distance of the non-identical half is compared.
+Hamming distances of non-zero half
+	FS=1	FS=2	FS=3	FS=4	FS=5-10	FS>10	sum	
+HD=1	6	1	2	1	1	0	11	
+HD=6	2	0	0	0	0	0	2	
+HD=7	15	0	1	0	3	0	19	
+HD=8	15	2	0	1	2	0	20	
+HD=9	37	4	1	4	4	0	50	
+HD=10	22	2	1	4	1	0	30	
+HD=11	8	1	1	5	3	0	18	
+HD=12	6	1	0	1	0	0	8	
+sum	111	11	6	16	14	0	158	
+
+