Mercurial > repos > mheinzl > hd
changeset 31:8beced3064e3 draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
| author | mheinzl |
|---|---|
| date | Wed, 14 Aug 2019 03:49:32 -0400 |
| parents | 46bfbec0f9e6 |
| children | b432cfa895ee |
| files | hd.py hd.xml test-data/hd_output.pdf |
| diffstat | 3 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/hd.py Wed Aug 07 04:01:32 2019 -0400 +++ b/hd.py Wed Aug 14 03:49:32 2019 -0400 @@ -240,7 +240,10 @@ lenTags, len_sample, len(numpy.concatenate(list1))) plt.text(0.14, -0.07, legend, size=12, transform=plt.gcf().transFigure) - legend2 = "SSCS ab = {:,}\nSSCS ba = {:,}\nDCS = {:,}".format(len(list1[1]), len(list1[2]), len(list1[0])) + legend2 = "SSCS ab = {:,} ({:.5f})\nSSCS ba = {:,} ({:.5f})\nDCS = {:,} ({:.5f})".format( + len(list1[1]), len(list1[1]) / float(nr_unique_chimeras), + len(list1[2]), len(list1[2]) / float(nr_unique_chimeras), + len(list1[0]), len(list1[0]) / float(nr_unique_chimeras)) plt.text(0.6, -0.047, legend2, size=12, transform=plt.gcf().transFigure) pdf.savefig(fig, bbox_inches="tight") @@ -1137,7 +1140,7 @@ sample_half_b = tag1[len(tag1) / 2:len(tag1)] max_tags = data_chimeraAnalysis[i, 1] - if len(max_tags) > 1 and type(max_tags) is not numpy.ndarray: + if len(max_tags) > 1 and len(max_tags) != len(data_chimeraAnalysis[0, 1]) and type(max_tags) is not numpy.ndarray : max_tags = numpy.concatenate(max_tags) max_tags = numpy.unique(max_tags) stat_maxTags.append(len(max_tags))
--- a/hd.xml Wed Aug 07 04:01:32 2019 -0400 +++ b/hd.xml Wed Aug 14 03:49:32 2019 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="hd" name="HD:" version="1.0.2"> +<tool id="hd" name="HD:" version="1.0.3"> <description>hamming distance analysis of duplex tags</description> <requirements> <requirement type="package" version="2.7">python</requirement>