Mercurial > repos > mheinzl > variant_analyzer2
changeset 62:66c1245436b9 draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Wed, 17 Mar 2021 13:24:40 +0000 |
| parents | 3722268ffac5 |
| children | f0fc93b7945c |
| files | read2mut.py read2mut.xml |
| diffstat | 2 files changed, 1 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/read2mut.py Wed Mar 17 13:14:40 2021 +0000 +++ b/read2mut.py Wed Mar 17 13:24:40 2021 +0000 @@ -1152,10 +1152,6 @@ # 'criteria': '=$B${}>="3"'.format(row + 1), # 'format': format2, # 'multi_range': 'L{}:M{} T{}:U{} B{}'.format(row + 1, row + 2, row + 1, row + 2, row + 1, row + 2)}) - #if trimmed: - #if key1 not in list(change_tier_after_print.keys()): - # change_tier_after_print[key1] = [((row, line, line2))] - #else: change_tier_after_print.append((row, line, line2, trimmed_actual_high_tier)) row += 3
--- a/read2mut.xml Wed Mar 17 13:14:40 2021 +0000 +++ b/read2mut.xml Wed Mar 17 13:24:40 2021 +0000 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.1" profile="19.01"> +<tool id="read2mut" name="Call specific mutations in reads:" version="2.1.2" profile="19.01"> <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description> <macros> <import>va_macros.xml</import>