ncbo_services: NCBO_services/README annotate

annotate NCBO_services/README @ 20:1910c878378c

get_ontology menu improved (Automatically generated), source added, readme improved

author	Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date	Wed, 25 Jan 2012 19:49:20 +0100
parents	4cd75b0d77af
children

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e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	4 =============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	5 NCBO Services
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	6 =============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	7
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	8
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	9
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	10 INSTALLATION
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	11 ============
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	12
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	13 1.- Stop Galaxy.
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	14
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	15 2.- Copy the .jar files to /galaxy-dist/tool-data/shared/jars/
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	16
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	17 3.- Create directory /galaxy-dist/tools/NCBO_services/
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	18
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	19 4.- Copy the .xml files to /galaxy-dist/tools/NCBO_services/
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	20
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	21 5.- Add the following lines to /galaxy-dist/tool_conf.xml:
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	22
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	23 <section name="NCBO services" id="NCBO_services">
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	24 <tool file="NCBO_services/get_ontology.xml"/>
18 0078fe4c89e3 get_ontology interface improved, extract tool added Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 16 diff changeset	25 <tool file="NCBO_services/extract.xml"/>
19 4cd75b0d77af get ontology view tool added Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 18 diff changeset	26 <tool file="NCBO_services/get_ontology_view.xml"/>
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	27 <tool file="NCBO_services/ncbo_annotator.xml"/>
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	28 <tool file="NCBO_services/ncbo_annotator.xml"/>
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	29 <tool file="NCBO_services/ncbo_recommender.xml"/>
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	30 </section>
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	31
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	32 6.- Start Galaxy.
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	33
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	34
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	35
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	36 USAGE
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	37 =====
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	38
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	39 Each tool has a different functionality, but all of them need a
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	40 bioportal API key. The API key can be obtained by creating an account at
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	41 bioportal (http://bioportal.bioontology.org/).
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	42
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e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	44
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	45 CONTACT
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	46 =======
e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	47
16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	48 Please send any request or comment to mikel.egana.aranguren@gmail.com or
d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	49 jose.minya@gmail.com.
0 e25b2c00fffd first version mikel-egana-aranguren parents: diff changeset	50
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20 1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	53 ACKNOWLEDGEMENTS
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	54 ================
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	55
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	56 The work on get_ontology, extract and get_ontology_view is funded by the
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	57 Marie Curie Cofund program of the EU, FP7.
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	58
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	59
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	60
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	61 COPYRIGHT AND LICENSE
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	62 =====================
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	63
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	64 get_ontology, extract and get_ontology_view are copyright of Mikel
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	65 Egaña Aranguren (2012), and they are distributed under a GPL 3 license
1910c878378c get_ontology menu improved (Automatically generated), source added, readme improved Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 19 diff changeset	66 (http://www.gnu.org/licenses/)
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16 d3d6bdbcf3ea get_ontology jars included for simpler installation and README updated with installation information for new tools Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> parents: 0 diff changeset	73
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Mercurial > repos > mikel-egana-aranguren > ncbo_services

annotate NCBO_services/README @ 20:1910c878378c