Mercurial > repos > mikel-egana-aranguren > ncbo_services
comparison NCBO_services/get_ontology.xml @ 2:86a5e3f4f32f
Minor tweaks
| author | Mikel Egaña Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu> |
|---|---|
| date | Sat, 31 Dec 2011 17:30:24 +0100 |
| parents | d0cff9cccc25 |
| children | 097aa7000159 |
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| 1:d0cff9cccc25 | 2:86a5e3f4f32f |
|---|---|
| 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.1"> | 1 <tool id="get_ontology" name="Get ontology by id" version="1.0.2"> |
| 2 <description>Retrieves an ontology from bioportal using its id</description> | 2 <description>Retrieves an ontology from bioportal using its id</description> |
| 3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> | 3 <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param name="api_key" type="text" size="100" label="BioPortal API key" /> | 5 <param name="api_key" type="text" size="100" label="BioPortal API key" /> |
| 6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" /> | 6 <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" /> |
| 8 <outputs> | 8 <outputs> |
| 9 <data format="text" name="output" /> | 9 <data format="text" name="output" /> |
| 10 </outputs> | 10 </outputs> |
| 11 <tests> | 11 <tests> |
| 12 <test> | 12 <test> |
| 13 <param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/> | 13 <param name="api_key"/> |
| 14 <param name="ontology_id" value="1522"/> | 14 <param name="ontology_id"/> |
| 15 </test> | 15 </test> |
| 16 </tests> | 16 </tests> |
| 17 <help> | 17 <help> |
| 18 | 18 |
| 19 **Usage** | 19 **Usage** |