Mercurial > repos > mikel-egana-aranguren > ncbo_services
diff NCBO_services/get_ontology.xml @ 0:e25b2c00fffd
first version
| author | mikel-egana-aranguren |
|---|---|
| date | Sat, 31 Dec 2011 10:08:28 -0500 |
| parents | |
| children | d0cff9cccc25 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/NCBO_services/get_ontology.xml Sat Dec 31 10:08:28 2011 -0500 @@ -0,0 +1,29 @@ +<tool id="get_ontology" name="Get ontology by id" version="1.0.0"> + <description>Retrieves an ontology from bioportal using its id</description> + <command>java -jar ${__tool_data_path__}/shared/jars/ncbo_galaxy.jar $api_key $ontology_id > $output </command> + <inputs> + <param name="api_key" type="text" size="100" label="BioPortal API key" /> + <param name="ontology_id" type="text" size="100" label="Ontology ID from bioportal" /> + </inputs> + <outputs> + <data format="text" name="output" /> + </outputs> + <tests> + <test> + <param name="api_key" value="74c12fc6-9423-455a-a619-b94f47d1951b"/> + <param name="ontology_id" value="1522"/> + </test> + </tests> + <help> + +**Usage** + + Enter bioportal API key and ontology id (e.g. 1522 for BioPAX), and the ontology will be retrieved. + +**Contact** + + Please send any request or comment to mikel.egana.aranguren@gmail.com. + + </help> + +</tool>