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comparison install.sh @ 20:46257c870179 draft

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New installation procedure added
author Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
date Mon, 08 Oct 2012 12:55:08 +0200
parents cc270db37d33
children
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19:cc270db37d33 20:46257c870179
1 #!/bin/sh 1 #!/bin/sh
2 2
3 # Shell script for installing OPPL-Galaxy 3 # Shell script for installing OPPL-Galaxy
4
5 # This script assumes that it is living in galaxy-dist/tools/oppl/
6 # if that is not the case, simply edit the var $jars bellow
7
8 jars="../../tool-data/shared/jars/"
9
10 cp oppl_galaxy.jar $jars
11 cp inference.jar $jars
12 cp query.jar $jars
13 cp oppl_query.jar $jars
14 cp merge.jar $jars
15
16 cp -r FaCT++-linux-v1.5.2 $jars
17 cp -r oppl_galaxy_lib $jars
18 cp -r inference_lib $jars
19 cp -r query_lib $jars
20 cp -r oppl_query_lib $jars
21 cp -r merge_lib $jars
22
23 echo 'Now you should edit /galaxy-dist/tool_conf.xml:'
24 echo ' <section name="Ontology Pre Processor Language" id="oppl">'
25 echo ' <tool file="oppl/oppl.xml"/>'
26 echo ' <tool file="oppl/inference.xml"/>'
27 echo ' <tool file="oppl/query.xml"/>'
28 echo ' <tool file="oppl/oppl_query.xml"/>'
29 echo ' <tool file="oppl/merge.xml"/>'
30 echo ' </section>'
31
32 # Foreseen feature: directly edit /galaxy-dist/tool_conf.xml with sed or something