diff install.sh @ 20:46257c870179 draft

New installation procedure added

--- a/install.sh	Sat Oct 06 21:50:39 2012 +0200
+++ b/install.sh	Mon Oct 08 12:55:08 2012 +0200
@@ -1,3 +1,32 @@
 #!/bin/sh
 
-# Shell script for installing OPPL-Galaxy
\ No newline at end of file
+# Shell script for installing OPPL-Galaxy
+
+# This script assumes that it is living in galaxy-dist/tools/oppl/
+# if that is not the case, simply edit the var $jars bellow
+
+jars="../../tool-data/shared/jars/"
+
+cp oppl_galaxy.jar $jars
+cp inference.jar $jars
+cp query.jar $jars
+cp oppl_query.jar $jars
+cp merge.jar $jars
+
+cp -r FaCT++-linux-v1.5.2 $jars
+cp -r oppl_galaxy_lib $jars
+cp -r inference_lib $jars
+cp -r query_lib $jars
+cp -r oppl_query_lib $jars
+cp -r merge_lib $jars
+
+echo 'Now you should edit /galaxy-dist/tool_conf.xml:'
+echo '  <section name="Ontology Pre Processor Language" id="oppl">'
+echo '    <tool file="oppl/oppl.xml"/>'
+echo '    <tool file="oppl/inference.xml"/>'
+echo '    <tool file="oppl/query.xml"/>'
+echo '    <tool file="oppl/oppl_query.xml"/>'
+echo '    <tool file="oppl/merge.xml"/>'
+echo '  </section>'
+
+# Foreseen feature: directly edit /galaxy-dist/tool_conf.xml with sed or something
\ No newline at end of file