Mercurial > repos > mikel-egana-aranguren > sparql_galaxy
annotate README @ 3:24ad2706526c draft
Reimplemented in Python, using RDFLib
author | mikel-egana-aranguren <mikel.egana.aranguren@gmail.com> |
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date | Fri, 25 Apr 2014 15:42:31 +0200 |
parents | b8bf1af83841 |
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24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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1 SPARQL-Galaxy |
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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2 ============= |
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b8bf1af83841
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
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24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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4 ABOUT |
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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5 ----- |
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b8bf1af83841
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
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7 Execute SPARQL queries against RDF datasets in Galaxy. |
2
b8bf1af83841
Paste query added, query engine improved, examples added
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
1
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8 |
b8bf1af83841
Paste query added, query engine improved, examples added
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
1
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24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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10 INSTALLATION |
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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11 ------------ |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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13 1. Stop Galaxy. |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
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15 2. Download or clone with mercurial (`hg clone http://mikel-egana-aranguren@toolshed.g2.bx.psu.edu/repos/mikel-egana-aranguren/sparql_galaxy`). |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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16 |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
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17 3. Copy everything under galaxy-dist/ to your server's galaxy-dist/ (i.e. recreate the tools/ and directory in your server). |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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18 |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
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19 4. Add the following lines to your server's /galaxy-dist/tool_conf.xml: |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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20 |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
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21 ``` |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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22 <section name="SPARQL-Galaxy" id="SPARQLGalaxy"> |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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23 <tool file="sparql_galaxy/SPARQLGalaxy.xml"/> |
117a4b4c002d
Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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24 </section> |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
diff
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25 ``` |
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
diff
changeset
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26 |
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
diff
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27 5. Start Galaxy. |
1
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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28 |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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29 |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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30 CONTACT |
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Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
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31 ------- |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
changeset
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32 |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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33 Please send any request or comment to mikel.egana.aranguren@gmail.com. |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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34 |
117a4b4c002d
Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
changeset
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35 |
117a4b4c002d
Added README but installation procedure not tested yet, pushed for backup
Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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36 ACKNOWLEDGEMENTS |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
diff
changeset
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37 ---------------- |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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38 |
117a4b4c002d
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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39 This work is funded by the Marie Curie Cofund program of the EU, FP7, |
3
24ad2706526c
Reimplemented in Python, using RDFLib
mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
parents:
2
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40 and the Genomic Resources group of the UPV-EHU. |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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41 |
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
diff
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Mikel Egana Aranguren <mikel-egana-aranguren@toolshed.g2.bx.psu.edu>
parents:
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