diff galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml @ 4:6501986529b0 draft

HTML or tabular option added
author mikel-egana-aranguren <mikel.egana.aranguren@gmail.com>
date Mon, 28 Apr 2014 16:11:05 +0200
parents 24ad2706526c
children
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--- a/galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml	Fri Apr 25 15:42:31 2014 +0200
+++ b/galaxy-dist/tools/sparql_galaxy/SPARQLGalaxy.xml	Mon Apr 28 16:11:05 2014 +0200
@@ -1,18 +1,28 @@
 <tool id="SPARQLGalaxy" name="Execute an SPARQL query against an RDF file" version="1.0.1">
 	<description>It executes an SPARQL query against the input RDF file and generates an HTML file with the variables and bound entities</description>
 	<command interpreter="python">
-	  sparql.py $ontology "$pasted_query" > $output 2>/dev/null
+	  sparql.py $ontology "$pasted_query" $out_format > $output 2>/dev/null
 	</command>
 	<inputs>
 		<param name="ontology" type="data" format="rdf" label="Input RDF file"/>		   
 		<param name="pasted_query" type="text" area="True" size="10x50" label="SPARQL Query" value="SELECT * WHERE { ?s ?p ?o }">
 		  <sanitizer sanitize="False"/>
+		</param>	
+		<param name="out_format" type="select" label="Output format" help="">
+			<option value="html" selected="true">HTML</option>
+			<option value="tab">TABULAR</option>
 		</param>
+
 	</inputs>
 	<outputs>
-		<data format="html" name="output" />
+		<data format="html" name="output">
+		<change_format>
+			<when input="out_format" value="tab" format="tabular" />
+		 </change_format>
+		 </data>
 	</outputs>
 	<help>
+
 	  
 **Important note**