Mercurial > repos > miller-lab > genome_diversity

annotate commits.log @ 22:95a05c1ef5d5

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
update to devshed revision aaece207bd01
author Richard Burhans <burhans@bx.psu.edu>
date Mon, 11 Mar 2013 11:28:06 -0400
parents d6b961721037
children 248b06e86022
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
22
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
1
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
2 :ea75d4a4ded0
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
3 cathy 2013-03-04 16:04
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
4 - documented the new Restore Attributes tool, and tweaked its description and UI
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
5 - adjusted doc for the new Rank Terms tool, and tweaked its description and UI
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
6 - added doc paragraph for new ability of Filter SNPs to handle % thresholds
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
7 - tweaked description and doc for Rank Pathways and PCA
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
8 - bumped version numbers for Filter SNPs and Remarkable Intervals, due to
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
9 new functionality and bug fix, respectively
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
10
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
11 :b63c3675e0a3
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
12 cathy 2013-02-04 18:31
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
13 Edited the README to instruct users to copy the files in static/images
95a05c1ef5d5 update to devshed revision aaece207bd01
Richard Burhans <burhans@bx.psu.edu>
parents: 21
diff changeset
14 into their Galaxy installation.
21
d6b961721037 Miller Lab Devshed version 4c04e35b18f6
Richard Burhans <burhans@bx.psu.edu>
parents: 18
diff changeset
15
d6b961721037 Miller Lab Devshed version 4c04e35b18f6
Richard Burhans <burhans@bx.psu.edu>
parents: 18
diff changeset
16 :f556345a4185
d6b961721037 Miller Lab Devshed version 4c04e35b18f6
Richard Burhans <burhans@bx.psu.edu>
parents: 18
diff changeset
17 cathy 2012-11-02 17:45
d6b961721037 Miller Lab Devshed version 4c04e35b18f6
Richard Burhans <burhans@bx.psu.edu>
parents: 18
diff changeset
18 Tweaked parameter labels.
18
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
19
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
20 :8703e16fca01
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
21 cathy 2012-10-04 11:42
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
22 More changes by Cathy, mostly in Phylogenetic Tree and Prepare Input,
f04f40a36cc8 Latest changes from Belinda and Cathy. Webb's updates to the Fst tools.
Richard Burhans <burhans@bx.psu.edu>
parents: 13
diff changeset
23 including some UI adjustments.
13
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
24
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
25 :7b775e5b68b4
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
26 cathy 2012-09-28 00:55
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
27 Galaxy didn't like my RST syntax. :-/
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
28
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
29 :9b5b4f73bd98
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
30 cathy 2012-09-28 00:08
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
31 Tweaks by Cathy, e.g. adjusting text where renamed tools are mentioned.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
32 Also riemerized through first section, "Initial Analysis".
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
33
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
34 :93eeef51be96
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
35 cathy 2012-09-27 14:03
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
36 Fixed datatype bugs in the Filter SNPs and Aggregate Individuals tools.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
37
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
38 :119e1e904cc4
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
39 cathy 2012-09-26 15:38
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
40 Restored modify_snp_table.py from the archive, since it's still used by the
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
41 Filter SNPs and Aggregate Individuals tools.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
42
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
43 :cc508d55cc9d
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
44 cathy 2012-09-26 15:16
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
45 Tweaked description for the Prepare Input tool.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
46
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
47 :cdb8430b1659
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
48 cathy 2012-09-26 15:10
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
49 Added ": " at the beginning of each description to separate it from the name.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
50
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
51 :3286bdea6b3d
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
52 cathy 2012-09-26 13:01
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
53 Clarified tool names and descriptions.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
54
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
55 :8a9bdfc0d31f
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
56 cathy 2012-09-19 17:15
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
57 Edited docs in aggregate_gd_indivs.xml: clarified "What it does", reformatted
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
58 example data.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
59
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
60 :f7c6a18af605
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
61 cathy 2012-09-19 11:31
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
62 Edited docs in specify.xml: clarified "What it does", reformatted example data.
fdb4240fb565 Uploaded Miller Lab Devshed version a51c894f5bed
miller-lab
parents:
diff changeset
63