Mercurial > repos > miller-lab > genome_diversity

annotate tool_dependencies.xml @ 35:ea52b23f1141

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Bug fixes for Draw variants, Phylip, and gd_d_tools
author Richard Burhans <burhans@bx.psu.edu>
date Wed, 20 Nov 2013 13:46:10 -0500
parents 5064f618ec1c
children e56023008e36
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
1 <?xml version="1.0"?>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
2 <tool_dependency>
32
03c22b722882 remove BeautifulSoup dependency
Richard Burhans <burhans@bx.psu.edu>
parents: 31
diff changeset
3 <!--
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
4 <package name="beautifulsoup" version="3.2.1">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
5 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_beautifulsoup_3_2_1" changeset_revision="83c21b81ee9d" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
6 </package>
32
03c22b722882 remove BeautifulSoup dependency
Richard Burhans <burhans@bx.psu.edu>
parents: 31
diff changeset
7 -->
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
8 <package name="eigensoft" version="5.0.1">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
9 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_eigensoft_5_0_1" changeset_revision="02f04f3579b5" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
10 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
11 <package name="fisher" version="0.1.4">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
12 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_fisher_0_1_4" changeset_revision="c84c287b81a4" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
13 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
14 <package name="gd_c_tools" version="0.1">
35
ea52b23f1141 Bug fixes for Draw variants, Phylip, and gd_d_tools
Richard Burhans <burhans@bx.psu.edu>
parents: 33
diff changeset
15 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_gd_c_tools_0_1" changeset_revision="989859342136" />
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
16 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
17 <package name="matplotlib" version="1.2.1">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
18 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="iuc" name="package_matplotlib_1_2" changeset_revision="9d164359606b" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
19 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
20 <package name="mechanize" version="0.2.5">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
21 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_mechanize_0_2_5" changeset_revision="59801857421b" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
22 </package>
33
5064f618ec1c remove munkres dependency
Richard Burhans <burhans@bx.psu.edu>
parents: 32
diff changeset
23 <!--
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
24 <package name="munkres" version="1.0.5.4">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
25 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_munkres_1_0_5_4" changeset_revision="613b89b28767" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
26 </package>
33
5064f618ec1c remove munkres dependency
Richard Burhans <burhans@bx.psu.edu>
parents: 32
diff changeset
27 -->
31
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
28 <package name="networkx" version="1.8.1">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
29 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_networkx_1_8_1" changeset_revision="43c20433f2d6" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
30 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
31 <package name="phast" version="1.3">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
32 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_phast_1_3" changeset_revision="f633177177b9" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
33 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
34 <package name="quicktree" version="1.1">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
35 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_quicktree_1_1" changeset_revision="dae77031fa2f" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
36 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
37 <package name="raxml" version="7.7.6">
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
38 <repository prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" owner="miller-lab" name="package_raxml_7_7_6" changeset_revision="77f73a8c45be" />
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
39 </package>
a631c2f6d913 Update to Miller Lab devshed revision 3c4110ffacc3
Richard Burhans <burhans@bx.psu.edu>
parents:
diff changeset
40 </tool_dependency>