diff multiple_to_gd_genotype.xml @ 27:8997f2ca8c7a

Update to Miller Lab devshed revision bae0d3306d3b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/multiple_to_gd_genotype.xml	Mon Jul 15 10:47:35 2013 -0400
@@ -0,0 +1,60 @@
+<tool id="gd_multiple_to_gd_genotype" name="Multiple" version="1.0.0">
+  <description>: to gd_genotype</description>
+
+  <command interpreter="python">
+    #import base64
+    #set species_arg = base64.b64encode(str($species))
+    multiple_to_gd_genotype.py --input '$input' --output '$output' --dbkey '$dbkey' --species '$species_arg' --format '$input_format'
+  </command>
+
+  <inputs>
+    <param name="input" type="data" format="txt" label="Input dataset" />
+
+    <param name="input_format" type="select" label="Input format">
+      <option value="csv" selected="true">csv</option>
+      <option value="fstat">fstat</option>
+      <option value="genepop">genepop</option>
+      <option value="vcf">vcf</option>
+    </param>
+
+    <param name="species" type="text" label="Species">
+      <sanitizer>
+        <valid initial="string.printable"/>
+      </sanitizer>
+    </param>
+
+    <param name="dbkey" type="genomebuild" label="Genome" />
+  </inputs>
+
+  <outputs>
+    <data name="output" format="gd_genotype" />
+  </outputs>
+
+  <!--
+  <tests>
+    <test>
+      <param name="input" value="test_in/sample.gd_snp" ftype="gd_snp" />
+      <param name="p1_input" value="test_in/a.gd_indivs" ftype="gd_indivs" />
+      <param name="lo_coverage" value="0" />
+      <param name="hi_coverage" value="1000" />
+      <param name="low_ind_cov" value="3" />
+      <param name="lo_quality" value="30" />
+      <output name="output" file="test_out/modify_snp_table/modify.gd_snp" />
+    </test>
+  </tests>
+  -->
+
+  <help>
+
+**Dataset formats**
+
+-----
+
+**What it does**
+
+-----
+
+**Example**
+
+  </help>
+</tool>